Mdis015265.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Micraspis discolor
Gene Symbol
-
Assembly
GCA_030674115.1
Location
JARTUT010000871.1:4210033-4218223[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 4.2e-05 0.0084 17.9 1.3 1 23 145 167 145 167 0.98
2 14 4e-05 0.008 18.0 1.7 1 23 251 273 251 273 0.98
3 14 1.8e-06 0.00036 22.2 2.9 2 23 280 301 279 301 0.97
4 14 7.3e-05 0.015 17.1 4.5 2 23 316 338 315 338 0.96
5 14 7.8e-05 0.016 17.0 5.6 1 23 403 425 403 425 0.97
6 14 0.0011 0.21 13.5 1.5 1 23 431 454 431 454 0.93
7 14 4.7e-06 0.00094 20.9 2.5 1 23 459 481 459 481 0.98
8 14 8.5e-07 0.00017 23.2 1.9 2 23 490 511 489 511 0.97
9 14 8.3e-08 1.7e-05 26.4 0.9 1 23 518 540 518 540 0.97
10 14 1.8e-05 0.0037 19.0 1.6 3 23 552 572 550 572 0.92
11 14 0.00017 0.035 15.9 4.2 1 23 578 600 578 600 0.99
12 14 7.6e-06 0.0015 20.2 1.8 1 23 606 628 606 628 0.96
13 14 6.9e-08 1.4e-05 26.6 0.2 1 23 634 656 634 656 0.99
14 14 0.00083 0.17 13.8 0.1 3 23 664 686 662 686 0.91

Sequence Information

Coding Sequence
ATGACTGAAAATCAAGTACAAGTTGATTTGAACAATATTTGTCGTTCCTGCATGGGAACGAATGAAAATATGCAAAATGTATTCGAGGATAAAGAATACTTCAAAGATAACAAACTCCAATTAGCTGAAATGCTTATGGCTTGTACCTCAATTCAAATTACCAGTGAAGATGGACTTCCAAATCTTATGTGTTCATCCTGCGAAGGAAAACTAATAACCGCTTATGATTTCAAACAGTTGAGTGAAAAATCTGATACACTTTTAAGGGAAATTTTGAAATCAataccagaagaaaataatgttAAAGAAGAAAGAATCATAATACAACCAGAGTTAATACAACCTGAATTAATTGAATTTGATGATAGAGATTATtctgacagtgattttgaagaTCCTGAGTctaaaaaaaacaagaaaactaaaaataaatatGCTTGTACACAATGTGATAAGGTATTTCGCACTCGAAAGGGTGTGAAATTACATGAGAGAAAACATAGTGCAGATAATGTTAAGGTAtggaatataaatatattaCTATCAATTAATTTCCAGAACTTCAGAAAAGAAAACAAAGAAAGTAGAAAAACTAGATCTTCTAAAGATTCCATAGAAGATGTAAGGAATGAGGTTAAAGTTGAGGACATGGAAATCGACGTACCACCAAAAGAAAAGGATGTAGAGCATCAACAAGAAATTCCACTAGAAGTAGAAATTAGGCAAGAAAATCAAGAGGGAAAAGAAGAACATGAGTGTAATATttgttcaaaaaaattgaacacTGCTACAGGATTGAAAATACATATGAGAAAACATACAACTTGTAGTGTATTGGTATGCGAAGTCTGTAATGAAAGTTTCACTAAACAAAGTCATTTTAAGCGCCATCAACTAACTCATGGGATAGTTGAATCATCTACTCCTAAAGAAAAGAAGCTGCTTCAGTGTGAATTCTGTGATAGAACATTTAAATACCGTAAAAGTTTCAATCATCACATGCAATCTGAACATGGGGTCGATGGTGATGACAGTGACGTTTGTCTGTCAACTATTGCGGAAAAAGTAAAGAAAGAAAAGGAAGATAAGGGAAATCCTAGTGGCTCCATAGATGATATAGGAGATTTGGATGATGATGACTTGTTGATGAAAATAGGTGAAGAGCCCTTCCAACATACGGATAAACAAAAACGTCCTCCCAAAGTCCATACGTGCCATGTATGTCAAACGGAGTTTAATAGAGCCAACCATTTGACCAGACATATGATTTTACATCGTGCCGTGTTGGTTCATAAGTGTACCCAATGCGATAATGCCTACGCCACCGAGGAGCATCTGAAGAAGCACGTCGAAGAAGGCCATGTCAATAAACCTTATGCTTGTACCATGTGTAACAAGCAGTTTAGCAGGGGAGAGCATCTTATAAGGCATTTGAAGACACATCAGGACGTGACTGAGGAAGATCTGAAATGTGCCATCTGCGAGAAAACATTCACAAGGTCTGATCATCTAGCCAGACATACAAAAGTTCATCTTCTGCAAGATAAGCGACATGTTTGCGCTGATTGCGGTAAGGCTTTCAATAGACTGGATAATCTAAAGACCCATCAAAGAATTCACACCGGCATCAAGGACCCATCAAAACTacatttatgtatttattgCGGGAAGGAATTCAATAATTCTAGTAATATGATCGTCCACATGCGGAGACATACAGGAGAACGCCCCTATAAGTGTGGCCAATGTGGTAAAGGATTTCCAAGATCTCACGATCTCAAATGTCATGAACGAACTCATTCAGGCGAAAAACCTTATCTTTGCACGTTATGTGGAAAATCTTTTAACAAGAGCAATAAACTGCTTCGTCACACTCGGGTTCACACAGGAGAAAGGCCTTATGTATGCAGCATTTGTGGAAGAGCCTTCACCCAATCGAACGATTTAGCATTGCATATGAGGAGACACACTGGTGCTAGACCTTACGGTTGTGGTATGTGCCCAGCTCGTTTCATACAATCGGGGCAACTCAAGGCTCATAGAAGATCTACTGGCCATTGGGTCGAAACACCGCCTGACCTCAAGGGAGGTCATAGGGTTGAGCCGGTCACTCCCATATTGGATCCTGTGCCCGTTCGGTTCAGGACTAAGCCCAAGATGGAGGATGAGAAACCTCCTGCGCAGATGATAAACCATATCCAAACTGTTCCACAACATGATATGATGAACAGTTATCAGATGGTTTCCGTGGTACCCGGCCCCCCGAAGCTAATCGGCCTTGGACTATCCGCAGAAACCATAGCAGCTATGGCCCCACGTCCTGAAGAACCGGATCACAATTCTATTCCTGCAGATATGAAGCTAAAGATGGAGAATACAGAGAAAGAGAATCAAACTATGGCTGAAACCTCATTCCACCATGATGCATTCGTGTTGCAAAAAAGCTATTTTCCGACTTACATGTAG
Protein Sequence
MTENQVQVDLNNICRSCMGTNENMQNVFEDKEYFKDNKLQLAEMLMACTSIQITSEDGLPNLMCSSCEGKLITAYDFKQLSEKSDTLLREILKSIPEENNVKEERIIIQPELIQPELIEFDDRDYSDSDFEDPESKKNKKTKNKYACTQCDKVFRTRKGVKLHERKHSADNVKVWNINILLSINFQNFRKENKESRKTRSSKDSIEDVRNEVKVEDMEIDVPPKEKDVEHQQEIPLEVEIRQENQEGKEEHECNICSKKLNTATGLKIHMRKHTTCSVLVCEVCNESFTKQSHFKRHQLTHGIVESSTPKEKKLLQCEFCDRTFKYRKSFNHHMQSEHGVDGDDSDVCLSTIAEKVKKEKEDKGNPSGSIDDIGDLDDDDLLMKIGEEPFQHTDKQKRPPKVHTCHVCQTEFNRANHLTRHMILHRAVLVHKCTQCDNAYATEEHLKKHVEEGHVNKPYACTMCNKQFSRGEHLIRHLKTHQDVTEEDLKCAICEKTFTRSDHLARHTKVHLLQDKRHVCADCGKAFNRLDNLKTHQRIHTGIKDPSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCGQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCSICGRAFTQSNDLALHMRRHTGARPYGCGMCPARFIQSGQLKAHRRSTGHWVETPPDLKGGHRVEPVTPILDPVPVRFRTKPKMEDEKPPAQMINHIQTVPQHDMMNSYQMVSVVPGPPKLIGLGLSAETIAAMAPRPEEPDHNSIPADMKLKMENTEKENQTMAETSFHHDAFVLQKSYFPTYM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00764914;
90% Identity
-
80% Identity
-