Mdis028492.1
Basic Information
- Insect
- Micraspis discolor
- Gene Symbol
- ZNF526
- Assembly
- GCA_030674115.1
- Location
- JARTUT010001740.1:2566940-2577683[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.058 12 8.0 3.3 6 23 245 262 245 263 0.96 2 19 0.0011 0.21 13.5 5.8 1 23 268 290 268 290 0.99 3 19 0.00011 0.021 16.6 2.6 1 23 296 319 296 319 0.96 4 19 0.00025 0.051 15.4 3.1 1 23 326 349 326 349 0.96 5 19 0.001 0.2 13.5 3.7 1 23 354 376 354 376 0.97 6 19 0.0071 1.4 10.9 0.9 2 23 386 408 385 408 0.93 7 19 3.8e-07 7.7e-05 24.3 1.6 1 23 413 435 413 435 0.97 8 19 5.3e-06 0.0011 20.7 0.6 1 23 441 463 441 463 0.98 9 19 3.3e-06 0.00067 21.4 0.5 1 23 469 492 469 492 0.97 10 19 4.8e-06 0.00096 20.9 0.7 1 23 498 520 498 520 0.98 11 19 0.0025 0.49 12.3 2.0 2 19 595 612 594 615 0.93 12 19 5e-05 0.01 17.6 0.3 1 23 622 645 622 645 0.96 13 19 1.1e-06 0.00022 22.9 0.7 2 23 653 675 652 675 0.97 14 19 1.5e-05 0.003 19.3 2.9 1 23 680 703 680 703 0.97 15 19 0.0043 0.86 11.6 2.1 1 23 712 735 712 735 0.96 16 19 1.8e-06 0.00036 22.2 0.4 1 23 742 764 742 764 0.99 17 19 2.7e-06 0.00055 21.6 3.1 1 23 770 792 770 792 0.98 18 19 0.00023 0.046 15.6 2.2 1 21 798 818 798 821 0.94 19 19 3e-06 0.00061 21.5 0.7 1 23 827 849 827 849 0.98
Sequence Information
- Coding Sequence
- ATGATCaattctactgatattttgCAATTATGTAGACTGTGTTTAGTGGAAGAAGAAGTTATACATCCAATTTTTGAAGAGTCAGGTGACTTGAGGAGCATATCCCTCAAGATAACTTCCTGTTTGCCAGTTTCGATCCAAAAAGATGACAGTCTACCCAAGAAAATATGCGACTCCTGCTCAACCAAACTGGATATATTCTATAAATTCTGGAGCGAAAGTGCTAATGCTGAAAAACAACTTCTGAATTGGCTGAGTGAAAACATAACATCGAAACAAAATAACGGAAACTCAAATAAAAAGATGGAGGCAACAGAAGTAAAAACAGAATTTGAGGATGCAACAGATCCAATTGATATGTCTGCAGAGGCTCAGTCATATATTTTGCAACAACAACAATTAGCATATTCATCAGCTAAAAGTGATTCAGCCAAAGTTTCAGAATCTGAAGAACCAGTATCAAAAAGGCCGAAAAGGGCTTCTGCTGTGAAAGCCTTACAGCATTTGGAGTCTGAGGAGGAAGATGATCCTGATCTTGAGGCTGACAATTATGCCAAAagcgaGTCGGAGGAAGAAGATGAGAGTAACCTAGATAATCCTTCTGCTACCTCTGTAGAAGATCAACCTGGCCCATCTGGAATTACGCAGAAAAAATTGCTTCTTGATGACACACCATCCCTGGAACCTATATGTCAAGTTTATGTCGACGAGGACTACGACAATTCCTTCTGTTGcggcaaaaaattttcatcttctaATGCTAAAAAGAAGCACTTGAAACAGCATCACGGCCCGAAAAAGTTCCAATGCTACGAATGCAATAAAAAGTTCTCTTGCAAATACCAATTGAAGGTACATGCGAAGACCCATCTTGCCACCAAAGAATACAAATGCTCTCTTTGCGAGAGGTCGTTTAAAACTGAAAAGTATATGGAGAATCACATGAATTTCAACCATATCAgaggaaattacagacatcaaTGTGCGATGTGCGACAAGAGTTACAGATCAGAAAAAGAACTTAGCCATCACATCGGCACCAAACATTTGGGAATCGTTCACAAATGTGAAATATGCTTCAAAGAGTTTTACAGCGATATGTACCTGAAGAAGCACATGTTGCAACATGACGACAGCTATGTTCCCCCTACCGTTCCTTGTGCACAATGCGACAAGGTGTTCTCTTGTAAGAGAAGCCTGACAGTACACGTAGAAAGTTTTCATAACGGTATAAGACACATATGTGAGGTGTGCGGGAAAAGTTTATCAACTCAATATTCACTAAGACTCCACATGCGCACACACTCGGATGAGAAACCGTTCGAATGCGAGATATGTGGCAAGAAATTCGCTAAGAGTAGCACGCGGCAAGATCACCTCAGGATCCACACCAAGCAGAGACCCCACGTGTGTCCGAAGTGCGGAAAGGGATTTACCCAAAGAACACCGCTGATCACTCACATCAAGTCTGTGCATGGAAGTGAGAGACCGTTCCAGTGTCTCATGTGCCCTAAAGCTTTTGCAACTAAGTCCCTTCTGAAAACCCATTCCAAGGTGCACGGGAAGCCAATAGGGAAGACAGTAGACTATAGGAAAAAAGACAAAAGAAAAGGaatcaaaaacaaggaaaatcGGAATAAAGAGTCAAGGAAAGAGCGAATAGATGGCGAAGAAGGGGATATATCTGAAGACACTGGTGAATGTAATGGCAACTTCGAATTAACGATGTCTACTAAGCACAAAAGAAGAAAATATTATAAGCGGGATAACCCACGAAATATTCCCTGTAAAATTTGCAATAGGCGTTTCACGTTCAATCATTTACTGAAGATACATTTTCACAACGATATCGAAAAAGGCGTATACAATTGCAGCATCTGTGGGGACGTTTTCAGTACACAAACTGACTTGGAGTCCCATCTAATGAATAAGCACGCGAAAGAAGCTCTAAAAATGAAATGCGATCAATGTGGAAAAAGTTACACCTACGAAGGTGATCTTAGTAGGCATATTCGAACAAAACACGAAGGATTCGATCATAAATGTGAAGCATGTGGCAAAACCTTCAACAGGAACGAGGCGCTTCAAGAACATATCCACACAAAACATGATGAAACTTATGTGAAGCCGAAGTTTCCATGTGCTTACTGTGATAAAATATTCTCATGCAAAAAAACGTTAACTTTACATGTAAAGAACATACACTACGGGTTGAGGCATTTTTACGTTTGTGATATGTGCGGCAAGAGTCTGGCAACGCCGAACTCGTTCAGGAACCATTTAAGAACACATACCAAAGATAAGCCATTCGAGTGTTCTATTTGTGGAAAGAGATTCGGTAGAAATCACCATCTTCAAGACCATCTGGTTACTCATACGAAGGAAAAGCCTCACATATGTTCGAGATGTGGAAAAGCCTTCACTCAGAGGGCGCCCTTACTGAGGCATATGAAATGTGTTCACGAAACGGCGAGGCCTTACCAGTGTTTGATATGTTCAAAGTCTTTCGCTACAAAATCTTTGCTTAACTCGCACGCTAAATTGCACAATGTCATAAATTGA
- Protein Sequence
- MINSTDILQLCRLCLVEEEVIHPIFEESGDLRSISLKITSCLPVSIQKDDSLPKKICDSCSTKLDIFYKFWSESANAEKQLLNWLSENITSKQNNGNSNKKMEATEVKTEFEDATDPIDMSAEAQSYILQQQQLAYSSAKSDSAKVSESEEPVSKRPKRASAVKALQHLESEEEDDPDLEADNYAKSESEEEDESNLDNPSATSVEDQPGPSGITQKKLLLDDTPSLEPICQVYVDEDYDNSFCCGKKFSSSNAKKKHLKQHHGPKKFQCYECNKKFSCKYQLKVHAKTHLATKEYKCSLCERSFKTEKYMENHMNFNHIRGNYRHQCAMCDKSYRSEKELSHHIGTKHLGIVHKCEICFKEFYSDMYLKKHMLQHDDSYVPPTVPCAQCDKVFSCKRSLTVHVESFHNGIRHICEVCGKSLSTQYSLRLHMRTHSDEKPFECEICGKKFAKSSTRQDHLRIHTKQRPHVCPKCGKGFTQRTPLITHIKSVHGSERPFQCLMCPKAFATKSLLKTHSKVHGKPIGKTVDYRKKDKRKGIKNKENRNKESRKERIDGEEGDISEDTGECNGNFELTMSTKHKRRKYYKRDNPRNIPCKICNRRFTFNHLLKIHFHNDIEKGVYNCSICGDVFSTQTDLESHLMNKHAKEALKMKCDQCGKSYTYEGDLSRHIRTKHEGFDHKCEACGKTFNRNEALQEHIHTKHDETYVKPKFPCAYCDKIFSCKKTLTLHVKNIHYGLRHFYVCDMCGKSLATPNSFRNHLRTHTKDKPFECSICGKRFGRNHHLQDHLVTHTKEKPHICSRCGKAFTQRAPLLRHMKCVHETARPYQCLICSKSFATKSLLNSHAKLHNVIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -