Basic Information

Gene Symbol
SNAPC4
Assembly
GCA_030674115.1
Location
JARTUT010001740.1:8750446-8756956[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 0.38 4.5e+02 2.4 0.0 3 18 197 212 195 231 0.83
2 6 0.035 42 5.8 0.0 22 46 277 303 259 303 0.88
3 6 5.5e-06 0.0065 17.9 0.1 1 42 309 352 309 356 0.88
4 6 1.2e-13 1.4e-10 42.5 0.0 2 46 363 411 362 411 0.96
5 6 1e-07 0.00012 23.5 0.0 3 46 420 463 418 463 0.97
6 6 0.084 1e+02 4.6 0.0 1 42 469 509 469 510 0.72

Sequence Information

Coding Sequence
ATGGATGAAGATAACGCCTGTGAGATGCAATCTGAAGATGAAAACGAATGTGACAAAACTTTCATTAGTTTGAGCAATGTTTTCCATGAATCAgGCACTAACGAGTTGCAGTTTGAGAATTTTCTTATAGATGAAAACAGTGAAAGTGAACAGATAGACTTTGCATATTCTGAGgataattcaaatatattagATGAAGACACAAGAAATACAGATATTATTTCGAATGATTCTATCAGTGTGTCTGAAAGTTGTTCTTTGGGATTTGAAAATTGGAATACTGTCAACAGTTTACAAACCTCGAACTTAGAAGatttaataaaattaaatcGTCAAGAAAGACACATGTTATTACAGTCATTCCATAAGATTAAAGAACATCTAAAAGTAGTTCAAGAAAGAAttcgaattttacaaaaaaatgtagaaaaaactattgaaaaGGGTACCCCTATGTTTTTATCAGAAACCGGAGCTCCTTTcttcaaaactaaaaaaaacagattttcaCCTAATCCAAATCCTGATTCCTTGTGTCGAAAGGCTAAGGGCATATTACAACCAGTTTATCAAAGTTGCTATCCTTTGAAGTGGTCCAAAAGTGAATGTGAAAATCTTATAAGAGGCGTAAAACTAACATATAATCTAAATAAACAGAAAGCCgttctcaaaaaaatatcttcttcaagaAGAGAAATTGAGTTCGAGTCAGACCCTAGTACTATTACccaaaaaaaatatgatatcGAGAAATGGGAAGGAGAAATCAGGAATCTCAAAGCACTGGGTATAAATGACACACCCCCACTATGTGATGATGAATTTATTGATTGGTTTCATATTGCAGCAGAATATCTAAATGACAAACACACTGCACAGGAATGTTGTTCTTTCTGGCGGATATATTTGCATCCAAGTATCAACAAGTCCAATTGGTCAAAAGATGAAAACCGTAGAATCAGAGAATTGGCCATAAAATACAATGAACAAGGTTGGGATGAAATAGCTGAAGAACTTTGTACTAGTCGTAGTGGTTTCACTGTTTATATTCATTATGCGACTTCTTTACATGAAACCTTAAGTTCAGGTAGGTTCACTCAAGAGGAAGACGAATTAATTTTGCAATTAGTTGAAcagaaaaaaaatggaaatttcatcccTTGGAACAGTATTGCTGAGAGTTTCCCAAAACGAACTAAAGCGCAGTTGATGAATAGGTATAAACTTTACTTACGTGACAAATGTTTATATAATAGCGAATTCTCGGATGCAGAAGATGTTCTAATCCTTCATCTGGTGGAACGTTTTGGTAGAAATTATATCCAGTTTACAAAGTATCTCCCTCGGAAATCGTATGTGCAAATAAAATCAAGATATAACAATCATTTGAGATGCAGAAGAATTAAGGGTGCTTTCACTCTAGAAGAGGATAGGCAAATACTCAATCACTTTGATGATCAACCGAATGGAATTACCACACTAGGTGAACAGATGAACAGAAATAGAATGCAATTGAGGCAGagatataaaataattgaaaaatttctccAACAAAATCCCCATAAATCATTAGAAGATATGCCACGAAGAATTGTTAGTACAAACGAAGACTTCAGAAGATTTGCATTCTTAAAATATGTTGTTGATCTATTTAAAGATCAGGTTAATATTCCTACACTCAGTGAAATTGAATCTAAAATAGGGAAAAATAAGAAAGGTAGTGATTTGGATAAGTTGCTTGTTGATTTTTTTAACACTTCCTATGCATTTAAACAAAGGACATCAGAAACACCTATTCATAAGATAAAATTAGCAGCAGAACAGATATATAGCATTACTAAATTTTTTGGGATAACTCTACAAATTCCTGAAGAAATTTGCAAAAACAATACCTTAGATATAGTGGATGTGGAAATTTTGAACTTACTTAGGCAAAAAGAATGCACAGATGCGCCCAAAACTGTAGTTCATGAATTATTTCCACCAAACATAAATTCTCTGCTGGGTCTGAGAGGTTTACTTATGAAAAATCAGAAATATAAGaaatcaaaaaataaaagaaacttGCAACTAGAACAGCCAATTCCAACAACCCAGAAGAACAATAATTTATATTCTGAATTAACTCAAATCCTGGAAAGCAAAGATCAAACTACCCAAACCAATATTCTGAAAGAAAGGGATCTTTTCTCAAATTTATTTCAGTCAATGTTTATGTGGCCAGCATTACTTTCAATAGAAACTCCAAATGAAAAATTACTTAAAAATGACTCAAGACCAGCGAAGTCTCAAACTATAAAGGATATAAacagtgaaaataaaaaaattacaaccaAAAGAAAACGTCAAATAATCCCCATTAAATCacctgtaaaaaaaaaaccaaagactATAATTGAAACAAAACCTCATGAAACTATGCAACCAATCAGATCCAGTTCTAGACTCAaaaagaaaagagaaatatCAGAAGAAGAGGAAACTATTATTCAGCAACCTGAAGTTGCACCAATAGATAACAGACAACCTATTGTAGcaaatacaattgaatcacataaAGCTCCAGCAATATCTGTTGTTGAAACTGCAAATAAAAAAACTAAAGGAAGCAGCTGTATTAAAACCATTATTCCTACCAAAAATGTGCCAATAATTCCTTCCAATCTTGTGAGAGTGGACAAAAGTGAAGTCATGAAGCATTTACAAAATAATAAACGTATAAAGATAATAAGAATTCAGACTCCCATAAAACAGAATATGATTGCTGAAGCCCAACCTTCTACCATGCAGATTATTCACAAAATGAAACAAGCGGAAAAGGACAAAAATCTGGAATCTTCCAGAGTTATTATCAACAATAAGATTTCAATAAGTAAAAGTCAAAATCATAACTTGCCCAGTAACACATCTTTAAATTTGGACGAAATGAAGAAAAACGTAAGCAACTCTATGAGGACAACAGAAAAGAACAAAACTCCTTTCGAAAAGGAAATATCCAAAAAGAATAATGATGCTGAAGATATTAACAAATTAGATCTTTTCCTTAAtgcaaattcaaatgaactgaTGAAAAAAGAGATTGATCAACTTGATGAACTCATAAAACAAGCAGACAACTCCAATGTTATCTAA
Protein Sequence
MDEDNACEMQSEDENECDKTFISLSNVFHESGTNELQFENFLIDENSESEQIDFAYSEDNSNILDEDTRNTDIISNDSISVSESCSLGFENWNTVNSLQTSNLEDLIKLNRQERHMLLQSFHKIKEHLKVVQERIRILQKNVEKTIEKGTPMFLSETGAPFFKTKKNRFSPNPNPDSLCRKAKGILQPVYQSCYPLKWSKSECENLIRGVKLTYNLNKQKAVLKKISSSRREIEFESDPSTITQKKYDIEKWEGEIRNLKALGINDTPPLCDDEFIDWFHIAAEYLNDKHTAQECCSFWRIYLHPSINKSNWSKDENRRIRELAIKYNEQGWDEIAEELCTSRSGFTVYIHYATSLHETLSSGRFTQEEDELILQLVEQKKNGNFIPWNSIAESFPKRTKAQLMNRYKLYLRDKCLYNSEFSDAEDVLILHLVERFGRNYIQFTKYLPRKSYVQIKSRYNNHLRCRRIKGAFTLEEDRQILNHFDDQPNGITTLGEQMNRNRMQLRQRYKIIEKFLQQNPHKSLEDMPRRIVSTNEDFRRFAFLKYVVDLFKDQVNIPTLSEIESKIGKNKKGSDLDKLLVDFFNTSYAFKQRTSETPIHKIKLAAEQIYSITKFFGITLQIPEEICKNNTLDIVDVEILNLLRQKECTDAPKTVVHELFPPNINSLLGLRGLLMKNQKYKKSKNKRNLQLEQPIPTTQKNNNLYSELTQILESKDQTTQTNILKERDLFSNLFQSMFMWPALLSIETPNEKLLKNDSRPAKSQTIKDINSENKKITTKRKRQIIPIKSPVKKKPKTIIETKPHETMQPIRSSSRLKKKREISEEEETIIQQPEVAPIDNRQPIVANTIESHKAPAISVVETANKKTKGSSCIKTIIPTKNVPIIPSNLVRVDKSEVMKHLQNNKRIKIIRIQTPIKQNMIAEAQPSTMQIIHKMKQAEKDKNLESSRVIINNKISISKSQNHNLPSNTSLNLDEMKKNVSNSMRTTEKNKTPFEKEISKKNNDAEDINKLDLFLNANSNELMKKEIDQLDELIKQADNSNVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-