Mdis016382.1
Basic Information
- Insect
- Micraspis discolor
- Gene Symbol
- -
- Assembly
- GCA_030674115.1
- Location
- JARTUT010000873.1:3388392-3390297[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-05 0.0034 18.5 0.0 2 41 39 78 38 80 0.88 2 2 1.2 3.7e+02 2.3 0.0 12 23 156 168 152 170 0.78
Sequence Information
- Coding Sequence
- atggcggatggaagtcatcaaacgttgctgaaggatatatcgaagaatcgcttaacaataaggaCAATGTCGGGGAGACGGAGAAGAAGCCAAGGTTTGAAAGTAAAATGGAATCATGAAGATTTGAATAGAGCGTTTAAATTAGTTGAAGATGGAACGACTATAAGAGAGACGGCTCGAATTTGTGCGATCCCATTTTCAACTCTTCAAGAaagattgaaaaacaaaaactatGAATTTCCATCTATGGGAAGAAATCCAATATTTACGAAAGAGCAAGAAGCCGAAATGGCAGACCAGATAAAATTCCTTGGTAAGATATTTTACGGTTGCACATCAATTCAAATTCGTAAGATGGCCTATGAATACGCAGTCAAAAACAGTGTTaagcaaaattttaatgaaaatattggTATGGCTGGAAAAGATTGGATCAAAGGATTCATGAAAAGAAACAATTTATCTGTTCGAAAAGCAGAAGGAACGAGTCTGAATAGAGCGGCAGCTTTCAACAAGAATGAAGTTACTTTATTTTTAAGCTGCTTGAGGAGTTGA
- Protein Sequence
- MADGSHQTLLKDISKNRLTIRTMSGRRRRSQGLKVKWNHEDLNRAFKLVEDGTTIRETARICAIPFSTLQERLKNKNYEFPSMGRNPIFTKEQEAEMADQIKFLGKIFYGCTSIQIRKMAYEYAVKNSVKQNFNENIGMAGKDWIKGFMKRNNLSVRKAEGTSLNRAAAFNKNEVTLFLSCLRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00998593;
- 90% Identity
- iTF_00998593;
- 80% Identity
- iTF_00998593;