Mdis014392.1
Basic Information
- Insect
- Micraspis discolor
- Gene Symbol
- -
- Assembly
- GCA_030674115.1
- Location
- JARTUT010000592.1:13500-14075[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-06 0.0016 19.5 0.0 3 38 17 52 15 55 0.92 2 2 1.9 5.5e+02 1.8 0.0 17 24 139 146 135 147 0.87
Sequence Information
- Coding Sequence
- atgccACGTAAAATAATTCGAAAGACCACAAAAGCTTCTTGGACAGTTGATACATTAGAAAATGCAGTCAATATCCTTAGAGCAGGAGGCATTTCGGTCTACAAAGTATCTCAGCAAACTGGCATACCTTATAGCACTTTAAAAAAGAGATTTAATTTAGCGAAAGCTGACGACGATCGGTACAAAAAAAGTCCTAAGCTGGGAAGATATACTGTATTCAGTTCCGAGCAAGAAAAAATACTGGCTAGTCATGTTCAGACTATGTCTAATAAATTTTATGGCCTGACGAGagaacaatttaaaaaaatatgttacgGTGTAGCTAAAAGCATGGGTATTGAACAAAGGTTTAACCAAGTAAGTCAAACTGCTGGAAAAGATTGGCTATCTGGATTTTTACAGCGCCATCCTGAGTTGAGTATTAGAAAGGCAGCTATTAGTATCAATAGAATTCTCGGATTTAACAAGACTGAAGTAAAGCATTTTTTTGATAACTTGGAGATATTAATGACAAAATACCACTTCGAACCTACGATGATTTACAATGTAGACGAAACTGGTACAACGACCGTGTAA
- Protein Sequence
- MPRKIIRKTTKASWTVDTLENAVNILRAGGISVYKVSQQTGIPYSTLKKRFNLAKADDDRYKKSPKLGRYTVFSSEQEKILASHVQTMSNKFYGLTREQFKKICYGVAKSMGIEQRFNQVSQTAGKDWLSGFLQRHPELSIRKAAISINRILGFNKTEVKHFFDNLEILMTKYHFEPTMIYNVDETGTTTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00998571;
- 90% Identity
- iTF_00998571;
- 80% Identity
- -