Mdis027637.1
Basic Information
- Insect
- Micraspis discolor
- Gene Symbol
- -
- Assembly
- GCA_030674115.1
- Location
- JARTUT010001447.1:21717-23106[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-10 8.3e-08 33.2 0.2 1 42 9 50 9 53 0.92
Sequence Information
- Coding Sequence
- ATGCCTCCAAAGGGAGCTCAGTGGACAGAAGACAATTTACGGGTCGCTTTGGCGGCAATTGAACGAGGACAGTTGACGCAACGAGCTGCAGCTGAACGTCACAACATTCCAAGACGAACTCTCCGAAATCATATCAAATCAAAAAGTGCTATTAAGCGCTTAGGTCGTAATTCAATACTGACAATAGACCAAGAAAAAGATCTTGTACAACGCATTATACGGTTTGCTAACATTGGTGAACCTGTTACTCCAAAAGTCATACGGAGACAAGCATTTTTATTTAGCGAGAATCATGATATTAAGCACAATTTAAATAAAGACTCCGGCATTGCGGGCAAAGATTGGCTTAAAATGTTTTTGAATAGGAACCCAGAAATTACCAAAAGAAAAGCACAGTTTATGAATCCAGGCAGAGCACAAAAATTAAATCGACCTATTGTTGCTCATCATTTCCAAGAAGGATGTAGACTCACTCTTCATCATCAACAAACTGTTTTAGCCCAAAAAGGAGCTCGTCGAATCCATTTGATTGTACCTGAACACGCCGAAAATGTTACCATAGCAATGTGTGTTAATGCTGATGGTACCGCTATCCCACCAATGATCATCTTTAAAGGCCAAAGACAAAAACCAGAATATAGTGATAACCTACCAGCTGGATATCTCGTAAAGATGGCTCTGAAAGAAATTATGACCACTGAGTTATTTATAGAATTCATCAAGCATCTGGGGAAGTATAAAACGCAGGGGAAAGCCTCGTTAATCTTTGATGGAGCATCCTCGCATCTAGATTATACAATTGTTGAAGAAGCAGATAAGGATGAACTTCAACATATATTCTCAAAAGAAAAGCAAATTGGTGTAAGGGCTTTAACCGATATTGCTGCAGCAACCTTTTCTGTAACAGTACCACAAAGCAAAAATATAAATTGCAATGCTTCAACTCCATCTCCAAAACCATCAACATCTGGTATTGTGATAAAACGTCCTTTAATTCTAAGTTCAGACTCGGAGTCTGATATTGAGCCTGACGCTGTACAGAAGATGTTGACAAGAGATGATCACACCagaatcaatatatatatacctccGAAGAAGACTCAGACGATGATACTCCACTAG
- Protein Sequence
- MPPKGAQWTEDNLRVALAAIERGQLTQRAAAERHNIPRRTLRNHIKSKSAIKRLGRNSILTIDQEKDLVQRIIRFANIGEPVTPKVIRRQAFLFSENHDIKHNLNKDSGIAGKDWLKMFLNRNPEITKRKAQFMNPGRAQKLNRPIVAHHFQEGCRLTLHHQQTVLAQKGARRIHLIVPEHAENVTIAMCVNADGTAIPPMIIFKGQRQKPEYSDNLPAGYLVKMALKEIMTTELFIEFIKHLGKYKTQGKASLIFDGASSHLDYTIVEEADKDELQHIFSKEKQIGVRALTDIAAATFSVTVPQSKNINCNASTPSPKPSTSGIVIKRPLILSSDSESDIEPDAVQKMLTRDDHTRINIYIPPKKTQTMILH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00998526;
- 90% Identity
- iTF_00998526;
- 80% Identity
- -