Basic Information

Gene Symbol
JARID2
Assembly
GCA_030674115.1
Location
JARTUT010001740.1:2456659-2462826[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.3e-21 7.9e-18 66.0 0.0 8 89 1523 1602 1519 1602 0.94

Sequence Information

Coding Sequence
ATGAAGAGGAAACGACGAGACCTTTGTCCTTCTCCACTGTTGGATGAAATACCCAAACGAACTAAGGTACATGCTCAAAGGAAGTTCGCACAAGGATCAAATATTAACAGTCCAGTGATAACACCAGTGCAGGAATTTGAAAGATCTGACAGATCTAATTTGAATCTTATACAGGAACCGGTAGAACTTCTTCCAATTAGAAGACAGAATACAGAAGATTTTTTGACTTTTCTGTGCTTTCGAGGAACTCCAATATTACCCCCtaatttgagttttttcaataCTGCCTCTATTGTAGATACAAATGGACAAGTCCATGAAATCAAAAGTGAGTCTCCCAAAAATGGACCTATTGACACATCAGTTATTCCTAAAGGGGGTAGTTGTTCATCTGAGAGACCTTTCATTGCTTTTGGTGTTAGAAAACGAGCGGACCCTATTGTGATAAGTAGGCAAATGGAAAGGAAGAGAAGGCATGCACTTGCCCTTCAAGCTTTAAGGCGAAAATATCAAGAACAGAAAATGGCTAAGATAAGAGCAGTTACAATTAGTAAATTATCAGAAAAACCTTCTAATAGAGCTATAGCTAGAACAAACTCTCTcttaaaattagaaaaaaatgctcaaaatatttcagctaaGTCAGTCACACCTAAAACTAAAGTGAAGATTATACCTTCTAAAACTGTAAATCCTCAAACAATAAGAAATTTTAGTACCAAAGTGAAACCACGTATGTGTTTACGCAGTTTTAGAGGACGTTTTGTGCAACAAGAACTACCATTTAGGgcagtaaagaaaaataaactgcCAGAGAAAAAGGCTCTTAAGGCTGCATTGAAACAAAAAAGAGAAATTAAAAAGAATGTGAAAACTCCTATAGAAATGAAACCTAAAAGAAAAGACACTGTTAGAGAGGTAGATCAGAGTAATGTTACTAAAAAAAGTATTACTTCCAAATCTGAAGAAAATGAAGTCAGAGTTACAAGATCTACTAAAGTTTcactaaaacaaaaaattaatgttaaaaaaactgttattaaaaatactGTCAAGAGGCGAATATTAATCCCTAGTTCCACTCTTGTGAAGTCACGTGTCCTAAGGTCCCAAACTACGAAAAGTAATAGTGTATCGAAATCAAGATTAACTAAAAAATCTTTAAACAGAACTATTGACAAAATGccagaaaaaatgaaaaggaAAACATGTATTGATCAAAGATCAAAGAAACCAATGAAAGCAGAGGATCTCAAGAGTAAAACTCCTGTAAGTGATATGAAAACaaacgaaaaattaaaaaaaaagaaacccATAGTTGAAGAGGAGAAAAAAGAATCAGTTCAAGTCACAAAATCTGTTACTGGTATGCTGCATAAGGATAATGGCAAGTCAAGTGCGAAAAGCATTTCAGAAAAACCTGTATTATGTAAGGTCAGTATGATTCCTGATGATAAAACTTCGAAGCAAGAAATTAAAGCTGACAATAAAAAAGGtgtggaaaaacaaaaaaatactggAACTAACAGAGATGCCGAAACAATTAATATACAACcaaacattttattgaaagatGCCAATAGAGAGAAGTCTGCAGTGAAGAAGAATACAGTAAGTCGTAATAATGATAAAGAAGTCGCAAATATTCAAGTGGAAAATATTAATGAATCCAAGTCTgtagtaaaaaaaaatacattacgCAAATTTAATAATGATACAGACAAATCAGATATTGCTTTGGAAGATGTTAATGAAGAAAAACCTGGAATAAAAAAGAATGCAGCAAATCGTAAGTGCATTATCAACAAAGAAAGCACaaatagaaatattaaattAGCTCCTACTCAACTGGAACCAGCGTCTAAAGGAAGACCTTCTAGAAAAACTAAAGAAGCTGCAGCAATTTATATGGAAATATTGAGTCATAAATTAGTTGAAGGGAGTAAGGTAGATGATGACACAGTTTCTATAGATAGTTTTCCTGAATTACCAAATGTTAAAAGAACGGAACAGCGGGAAAATGAACTGAAAGCCAAAGCGAATATAAGTAAAACAGATAAATCAAATATTGTAGAGGAAAAATTACACAATATGGAAGACTCTGCCATAAGCAATGATCTAAGTAATATCAACTGCATTCAACAAATCGAATATAAGCCCTCATTTGTAGACATTGATTCAAAAGAAAAAGATAGAAAACAATCAGTGAAGAAGACTGATTCATTGGCTGATGAAATATCGTCTGTGAACACATTACAAGCTGTAACTGTGCAGAAGGGTAAAAATGAAAAGCAAATAgcagaaatatcaaaaaaaattggGGGAAATGCTACAtgtcttgaaaaaataaaagttgAATATAAGGCAGATTCTAAGAGTGATATAAAAGTTAAAGACGAAAAGAATCAAACAAATGTTACTGATTTGGGTCAAGAAATATCAAAAACTACGGAGCAAGAACAAAAGAAGCAAACTAATAAATTTGAAGAGAAGAATCAAGAAACTTGCCAAATTAAATCTAGTAAAGATTCTTTGAAACAGAAAGAAATCGAAATGAAAAAGTCTAAAGTAAAAGTAACTAAAGGTGATGCTACAAATGGAAAGAGTGATGAAATGAAGGTACTTCCAGTGTTGTCCAATAATATGCAagtatttgaacaaaaaatttacaaaaagcTCAATTCTAAAGATTCTTCCGATTCAGATGAATGTCTAGCCAAAATACCAAGAAAAACGAAATTAGCACATGCAacaaaaaataaagaattattCAACAAAAATGTCTCAGCAACTAAGGAAGATATAAAAAAGAATAATCAAATCAAAACAGAGGAACACTCTTCAGATTCTGAAAATGAGTGTTTAGCAAAGATAAAAGAAACTAAAAATACCATAGAAGGAGCAGGTCGAAAAAAATCAAGTGGGGAAAGTAAAACTATCAAATCTGGTAAATCTGAAAACTTTATGAATACGAATATAAGGAAAAAAGATTTGAGTTGTAAATCTCTGAAAGTATCTTCCACTACCAAAACTAACACTAATCTGGATAAAACTTGTGGTAAATCAGATGTATCTTCAAAGTCATTCAAACCTGTTTGtttaaaatcaacaaaaaataaaattataagtAAAGAAGGAAATTTTAGTGATTCAGATGAGGAACCTCTTTCAAAACTTACAGTGAATAAATTGTGTGATAAAAAATCTACTGAGGAATTGAAAGAGGATATACTTAGGAAACAGAAAGCATTAATTGAATCTCCTCCAAGAAATAAGGGCAAAAAACTTCAAAAACATAAAGAAAAAGAAGTTTCTAACACAAATAAACATGAAGAACTGCCATCTAAACAAAAACGAGAGTGTGCTAAAATCCCTTCCAACTATCTTCCAATGTTTTCTTCTTCAGATGATGAAGAAAAATTCCATGGATTTTCTccaaaaaatgagaagaaaaagGGAAGTCTATATTCTCATTCATCGTTGGATTTTTTATCCAAAGGCTTGGGGAGACGTTTCGGCAAGGAGAAAGTCAATATGTCGaatgagcaaattgaaaaatggCTTAAAGAATCTGCAATGGCAGGTGATGACAGCAAAAAGGTGGAGGAATTAAAATACTGCGATGAAATCACTCCAGAAACGTCCCTCAATAAAGATCTGAGTAGTTTAGAGCAAGCAAAAAGCCCTTTTTTAGAACCTACAGGTTCCGCAGATAATAAGGAATCAACCCCAAAGAAAAGACATAATACTTTGGAGGACCACTTGAAATCTTCTTTATATAAATCGCCTGATAGAAAACCAATTTTCAAGAAAGAAAAATCCAGAGTGGCTCCAACTGTTGGAGCATTTTCTGCTAACAACGAAAGTAGTATTTATGCTTTTGAAGAAGAAGTAGAAGAAGCAGTGAGTACACCTTTTCGCAGACCGTCAAGAAGACCTTCCTCTACAGCTACTTCGAAATCAGAGGATGAGCTACCTAAAATTGAAGACCAACCTAAGTTTGGTCAATTCAGAAAGCCTGTACTCAAAAATGAACTAAGCAAAAACGAGgatcaaaaattgaaagaaattgaaTCGAATTTGAAACAAAACCAAGGTTCTTCTAGTCAAAAGTCTTCACAAAAAATTCCTATTTCTCGCACTGCTTCAAGTAAAAACATCAAAAAAAACAGTGCTGATCAGTTTGATGATTTCAAATACAAAATTCCAAGTTCCCCAAGTGCAAGTTCATCATCCAGtgcaaaattatataaaaaacaaaataaaaataaaccaaaaCCTGTTGAAAATTGTAATGCTGTGCATATGGCTGATTTTCCTTGCAACGGACCTGGAGATCTTGTAGAAGCGCCAACATTTTATCCATCTGAAAAAGAATTTCAAGATCCGTTagaatatattgagaaaattggaCGAACGGCAGAGCAATTTGGAATTTGCAAAATAGTTCCACCTAACACTTTCAAACCAGAATGTAAAGTTAGTGATGATATGAGGTTCACTTCATATAATCAGTATGTTCATAAAATGTTACATAGATGGGGTCCAAATTTCAAAGAGTTGATagcaataaaaaaatacctTCACACACAGaatataaatttgaagcaacctccTTGGATTGGGGGCATGGAGGTGGATTTACCTAGGCTTTACCAAACAGTGCAGAGCTTGGGAGGTTTGAAAGAAGTGATAGAAAAAGAAAAGTGGTCCAAGGTTTCTGATATCATGAGAATTCCTAAATCTGCACAAGACAGAGTAACAAAACTTGATGACATCTATTGCAAATATTTGCTTCCATATGATACATTATCTCCCGATGAAAGAGAAAAGCTGTTGGATGAAGTTGAAACTGCGTGGGCTAAAAAGGAATCAAAAACCCTGTCAAAAATGCAAAAATTGGAAAGTGCTGAAACAGAGAATGGATCTGATTCCGATTCGGATAATGAAGTTGAGGAATGCATAACAAAGGGACGCAATATGGCTCTGAATGCTTTCTACAGAATTGCCAGAAACACAATGAGTATGTGGTTTAAGAGTTCTGAACCTACAGTACAAGATATCGAACAAGAATTTTGGAAACATGTAGTGCATAGAGATAATCACATTTGTGTGCATTCTGGGTCAATAGACTCAGGAAGCTACGGTTATGGCTTTGCTGTTACGAAAAACAGTCCATTTGCCAGGCATAGTTGGAATTTGAAAGTCTTAACAAACAACAGTGGCTCCCTCTTGAGAGCTCTAGGCCCAGTTATGGGAGTGACTGTGCCAACACTACATGTTGGCATGGTGTTCAGTGCATGTTGCTGGTACAGAGATCCCCATAGCCTGCCTTGGATTGAGTATCTTCACACTGGAGGCAAAAAAATTTGGTATGGTATACCAAATTCAGTTGGTGACAAGTTCCAGAATGCTCTCACAAAGTTAGTTCCGAATTATTGTAGAAATCAAGGAATTTGGTTACCCTCTGACACTGTTATGTTACCACCTAGTCTTCTCACGGAATCTGGAGTTCCATTAAGTCGAATTGTGCAAGAACCTGGAGAATTCATTGTTGTTTTCCCTAAAGCATTCACGTCAAGCATCAGTACTGGTTATGTTGTGTCTGAAAGTGTGTTCTTTGCCCCATTATCTTGGCTGAAAACAGCTCAAATGACATTTGATTTGCTGAAAGAAAGCTGTGAGCCTTCAATGTTTTCATTGGAAAGACTATATCTTAGCATAATCAACGATCAAAGGACAAATATTGAAGTTTTGAAACAAATGATTCCCATAGTCAATTCTATACACTCTAAAGAGAAATTCAAAAGGGAGAAACTTCAATTATTAGGGGTGAATAAGGTTGAAAGTCTCCCTCCTCCTGAAGCATCAAACTCCAAAAGGAAGAAGAAAACTCAAGATGTTGGGGATTACGAGTGTGAAATATGTAGAACTAACCTTTTTATATCTTCAATCTTAGAAAAACAAGAAAACGTTAACTACTGTTTGGATCACGCTATTGATCAAATCGAAAAGAAACTTATTCAGCCAGATAATTGTAAACTTTTATACACATATAGTGAATCTGATTTGGAAGATTTGGTTTCCAAAATTAACAACACAATAGAGCAGAAATTGCAGAAAAAAGTTTTCAGTAAGTTCAGCGGAATGCCTACTCTacttaaatga
Protein Sequence
MKRKRRDLCPSPLLDEIPKRTKVHAQRKFAQGSNINSPVITPVQEFERSDRSNLNLIQEPVELLPIRRQNTEDFLTFLCFRGTPILPPNLSFFNTASIVDTNGQVHEIKSESPKNGPIDTSVIPKGGSCSSERPFIAFGVRKRADPIVISRQMERKRRHALALQALRRKYQEQKMAKIRAVTISKLSEKPSNRAIARTNSLLKLEKNAQNISAKSVTPKTKVKIIPSKTVNPQTIRNFSTKVKPRMCLRSFRGRFVQQELPFRAVKKNKLPEKKALKAALKQKREIKKNVKTPIEMKPKRKDTVREVDQSNVTKKSITSKSEENEVRVTRSTKVSLKQKINVKKTVIKNTVKRRILIPSSTLVKSRVLRSQTTKSNSVSKSRLTKKSLNRTIDKMPEKMKRKTCIDQRSKKPMKAEDLKSKTPVSDMKTNEKLKKKKPIVEEEKKESVQVTKSVTGMLHKDNGKSSAKSISEKPVLCKVSMIPDDKTSKQEIKADNKKGVEKQKNTGTNRDAETINIQPNILLKDANREKSAVKKNTVSRNNDKEVANIQVENINESKSVVKKNTLRKFNNDTDKSDIALEDVNEEKPGIKKNAANRKCIINKESTNRNIKLAPTQLEPASKGRPSRKTKEAAAIYMEILSHKLVEGSKVDDDTVSIDSFPELPNVKRTEQRENELKAKANISKTDKSNIVEEKLHNMEDSAISNDLSNINCIQQIEYKPSFVDIDSKEKDRKQSVKKTDSLADEISSVNTLQAVTVQKGKNEKQIAEISKKIGGNATCLEKIKVEYKADSKSDIKVKDEKNQTNVTDLGQEISKTTEQEQKKQTNKFEEKNQETCQIKSSKDSLKQKEIEMKKSKVKVTKGDATNGKSDEMKVLPVLSNNMQVFEQKIYKKLNSKDSSDSDECLAKIPRKTKLAHATKNKELFNKNVSATKEDIKKNNQIKTEEHSSDSENECLAKIKETKNTIEGAGRKKSSGESKTIKSGKSENFMNTNIRKKDLSCKSLKVSSTTKTNTNLDKTCGKSDVSSKSFKPVCLKSTKNKIISKEGNFSDSDEEPLSKLTVNKLCDKKSTEELKEDILRKQKALIESPPRNKGKKLQKHKEKEVSNTNKHEELPSKQKRECAKIPSNYLPMFSSSDDEEKFHGFSPKNEKKKGSLYSHSSLDFLSKGLGRRFGKEKVNMSNEQIEKWLKESAMAGDDSKKVEELKYCDEITPETSLNKDLSSLEQAKSPFLEPTGSADNKESTPKKRHNTLEDHLKSSLYKSPDRKPIFKKEKSRVAPTVGAFSANNESSIYAFEEEVEEAVSTPFRRPSRRPSSTATSKSEDELPKIEDQPKFGQFRKPVLKNELSKNEDQKLKEIESNLKQNQGSSSQKSSQKIPISRTASSKNIKKNSADQFDDFKYKIPSSPSASSSSSAKLYKKQNKNKPKPVENCNAVHMADFPCNGPGDLVEAPTFYPSEKEFQDPLEYIEKIGRTAEQFGICKIVPPNTFKPECKVSDDMRFTSYNQYVHKMLHRWGPNFKELIAIKKYLHTQNINLKQPPWIGGMEVDLPRLYQTVQSLGGLKEVIEKEKWSKVSDIMRIPKSAQDRVTKLDDIYCKYLLPYDTLSPDEREKLLDEVETAWAKKESKTLSKMQKLESAETENGSDSDSDNEVEECITKGRNMALNAFYRIARNTMSMWFKSSEPTVQDIEQEFWKHVVHRDNHICVHSGSIDSGSYGYGFAVTKNSPFARHSWNLKVLTNNSGSLLRALGPVMGVTVPTLHVGMVFSACCWYRDPHSLPWIEYLHTGGKKIWYGIPNSVGDKFQNALTKLVPNYCRNQGIWLPSDTVMLPPSLLTESGVPLSRIVQEPGEFIVVFPKAFTSSISTGYVVSESVFFAPLSWLKTAQMTFDLLKESCEPSMFSLERLYLSIINDQRTNIEVLKQMIPIVNSIHSKEKFKREKLQLLGVNKVESLPPPEASNSKRKKKTQDVGDYECEICRTNLFISSILEKQENVNYCLDHAIDQIEKKLIQPDNCKLLYTYSESDLEDLVSKINNTIEQKLQKKVFSKFSGMPTLLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-