Marg009920.1
Basic Information
- Insect
- Metopia argyrocephala
- Gene Symbol
- grau
- Assembly
- GCA_963576795.1
- Location
- OY756208.1:181213877-181216405[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.6 1.9e+02 3.9 0.6 6 23 259 276 259 276 0.93 2 9 0.00025 0.031 15.8 5.2 1 23 282 304 282 305 0.94 3 9 0.00025 0.031 15.8 1.5 1 23 313 335 313 335 0.96 4 9 1.6 2e+02 3.8 0.6 2 23 344 369 343 369 0.87 5 9 0.0086 1.1 11.0 1.2 3 23 376 396 375 396 0.97 6 9 0.0096 1.2 10.8 0.2 2 23 405 428 404 428 0.94 7 9 0.00012 0.014 16.9 3.2 1 23 435 458 435 458 0.97 8 9 6.8e-06 0.00083 20.8 1.2 1 23 463 485 463 485 0.97 9 9 0.00046 0.056 15.0 3.8 1 23 491 514 491 514 0.97
Sequence Information
- Coding Sequence
- atgttATGCTGTATATGTTTATTGGAAACCCCTCAAATGCTGGGAATTTTCGATTCCAATGGATTAAGACTTGGGATtgccaatacaataaatacacatttttggTTCAagGCCACTTCCGATGATATGCTTACAtctcatgtatgtacattatgTTGGCAAATAGTTCATGAGTTCCATGAGTTTTATATAAGTATTGAAAGTACACATAAAGCTTTTAAACAGAGACAACACAGCATTACGGATATTAAGAAAGAAGAAATTTCCGATATTAAACAAGAGAAATATGACCAAGATGAGACTTCTTGTGAAAATAAGTTAATGCAATGTGAACTAGATATAAAAGAGGGGGAACACAATGCAATATGTGATATAACCCAGAAAAATCCTTTAGAAAGTGAACAAAATCTCAATGACTGGCACGACGAGGAATATTTAGATATTGATAGTAAAAGTAATACATCATGTGAATATGGAGCATCTGAGTTTAGTGAGCCTGATGAACAATCAAAAAACTACAAAGTTGAAaatgaaacaaatgaaaaatgtaagaagagaaaaacacaaCAGAAAGATTATAGTAAACCAGAACATGTTTATGAACCTAAGAAAAAAAGGAGCTCTTATCGTTTGGACCCTTTACTAATAGAAAAATTGATCAAGAAACATATACAAATGATGTGTGATCTATGTATTTATTCAGGTAGTACATTTTCTGATATAGTCACACATTTTAAAGAGCATCATTCTGATGTTCAACCGTATATAATGTGTTGTAATAGAAAATTTACACGTAGTTATTGTATTGATCAACATGCTATTATTCATGAAAATCCTGATTCTTTTAGATGTAACAAATGCAATAGATCTTTTACTACCACTTATGGTTTGCGTACTCATAACTTAAATCATCACGATCCGGAAGAAAAGCGTATTCATGCCTGTGAATTCTGTCCAAGAAGATTTGGCAGACGTCAATTATTGGAGGTACACAGACAAACACATATACCAAAAGAAAAATGGACTATAACGTGTACAAAGTGCACTGCTCGTACTGTTAAGTTCGTTTCTCAATATTTACTAAATATTCATAATAGCATGTTTCATAAACGTGAGGCAAATATCTGCCATGTATGTGCcaagaaaataaaagataaaaaagcatttgaaaaacATGTTCGAGCTCACTTTGAGGAAAGTGGGCCTCGCGTTAAATGCACTTATCCTAACTGTGGACGTTGGTTAAAGGATGAAGACAATTTAAAGACTCACATGCAGTTGCATAACATTTCGGGCAAAACTTATAAATGTACTGAATGCAACAAGGAGTGCCCAAATCGTAGAGCCTTAACAAATCATAAACGTTATGTgcattcaaatcaaaattttcGATGTGGAGAGTGtaataaaacgtttaaaaaagcAATTTCCCTAAGAgaACATATGACTCAACATACAGGGGAAACGCTATATAATTGTCCTTTCTGTACTAGAACTTTCAATTCAAATGCAAATATGCATGCacacaaaaagaaacaacatcCTATTGAATGGAAAGAGTtacgaagaaaaaatattgggcCAATTGTGGATTga
- Protein Sequence
- MLCCICLLETPQMLGIFDSNGLRLGIANTINTHFWFKATSDDMLTSHVCTLCWQIVHEFHEFYISIESTHKAFKQRQHSITDIKKEEISDIKQEKYDQDETSCENKLMQCELDIKEGEHNAICDITQKNPLESEQNLNDWHDEEYLDIDSKSNTSCEYGASEFSEPDEQSKNYKVENETNEKCKKRKTQQKDYSKPEHVYEPKKKRSSYRLDPLLIEKLIKKHIQMMCDLCIYSGSTFSDIVTHFKEHHSDVQPYIMCCNRKFTRSYCIDQHAIIHENPDSFRCNKCNRSFTTTYGLRTHNLNHHDPEEKRIHACEFCPRRFGRRQLLEVHRQTHIPKEKWTITCTKCTARTVKFVSQYLLNIHNSMFHKREANICHVCAKKIKDKKAFEKHVRAHFEESGPRVKCTYPNCGRWLKDEDNLKTHMQLHNISGKTYKCTECNKECPNRRALTNHKRYVHSNQNFRCGECNKTFKKAISLREHMTQHTGETLYNCPFCTRTFNSNANMHAHKKKQHPIEWKELRRKNIGPIVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -