Marg002365.1
Basic Information
- Insect
- Metopia argyrocephala
- Gene Symbol
- -
- Assembly
- GCA_963576795.1
- Location
- OY756208.1:55603467-55606903[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.4 2.9e+02 3.3 0.0 2 23 215 236 214 236 0.94 2 13 0.09 11 7.8 6.5 1 23 242 265 242 265 0.93 3 13 4.8 5.9e+02 2.4 0.1 1 19 279 297 279 302 0.73 4 13 5.4 6.6e+02 2.2 1.5 2 23 307 330 307 330 0.91 5 13 0.00015 0.018 16.6 0.8 1 21 350 370 350 371 0.96 6 13 0.15 19 7.1 2.0 1 23 399 420 399 420 0.97 7 13 0.002 0.24 13.0 2.4 2 23 435 456 434 456 0.94 8 13 0.00036 0.044 15.3 0.7 1 23 465 488 465 488 0.96 9 13 4.8e-05 0.0059 18.1 0.6 3 23 495 515 494 515 0.97 10 13 9.4e-06 0.0012 20.3 2.1 2 23 521 542 520 542 0.97 11 13 0.0019 0.23 13.1 1.7 3 23 550 570 548 570 0.97 12 13 0.002 0.24 13.0 3.1 1 23 575 597 575 597 0.94 13 13 0.16 19 7.0 3.4 1 23 602 626 602 627 0.96
Sequence Information
- Coding Sequence
- atgacaCAACGATGTCGTTGTTGTTTAACCACAAACGCTGATATATACTTTGATATATTTGGGCAATATAAACCAGGGACTACCTACGCTGAAAATATACGCTATTTAGCTGAAGTACAAGTAGAACATAATGATGGTCTACCCCAGCATATATGTTCCATTTGTTGTAATGAATTCCGGCATATATATGAGTTTGGAAAGACAATTCGTCAGGCTGATGAGAGACTAAGGCAAGAATTGTTGGTCCCAGAAAAAAGTAATACGGAAGAAGACGACGTACAAATGGAAAACGTACAAGTATTGGATAATGAGTACTTTTCATCGGTGGACGAGAATGTCATGCAAGTGTGTGTCATAGAAGAAATTCTAGAGCATGAAACGGAACAGGAGGATGTTATAGTAGAgGAAATCCAAGAAGTGGAGGAACTTAATATTATGGAAGAATTATTAGATGTTGATAAAGAATCTAAAGAAAACTTATTAGTGGGTCTAGCTCAAGTAGCTTCCACACAGGAAAATGTAAATATCACAGAAAATGCAGATGCATCCAACGAAGTATTTTTTCCGGAAGATGAGTTGGATGATAACTATTTAGTAGAGTTTAATGAAAACGAAGAATACTCCCATAAGCAACCTAAATGGAAATGTGGAGAATGTAAACTTATATTACGTGGTGACGTCTCGTATGAAGGTCATATGaatattcacaaacaaataaaaccacATCAATGTTCTGAGTGTCAGACCAAGTTTAGATGTCGATCAGCACTTAAACGGCACAAAGAATTAAGACATTCACATTCCTTACAAAAAATTGATATTACAAAACCTGCCTATTCTTGTGCGGAGTGTAATAACAGTTTTCTATCCAGCagtatatataaattacatGAAATAATTATCCAtgaaaaaggtgaaaaatgtcCATTTGAATGTAATTTTACTAATAACATATGTGACAATTTAAAAGAACATGTTATGAAAATACATGCTAACCAACTCGATTCacttactaaaatattttataatgaagATGCTTTAACAATATATCAATGTTATAAATGCTCTGAGACATTCGAAAAACAATCTTTGCTAGAGTatcatatgcaaatgtgtgaatTCATAGAGGAACATCTGCAGGAGGATATCATTTCTCttgaaaatgatgcaaaaaaaccgCAATCAGAGGACATATATCAGTGTAAGATATGCAGaaggaaattattaaagaaaaacataaataagcATATGGAACTGCATAAACGTAAGGAAAATAAAGAGCAACAAGAAACGAACAAATTTCTATGCGCCTTTTGTCcaCGCGAGTTTAAAAATTCCAAATCACTACATCAGCACGAAAAAATTCACCAAGGTGAACGGGCGGACATCGTATATGTTTGCGGCGACTGTGATCGTCAATATGCTTCGGAATATTTATTAGAAACACATCGCAAACATGCGCATAAGGAGCGAGATAACATTTGTAATATATGTGGTAATGCCTTTAAGATGAAAAATCAATTAATGAATCATATGAAACTGCATTTGGAAAAGAATATACCTTGTCCACATTGTGATAAAAAATATGCCCGACACTTTGATTTAAATGTACACCTAAGATCGCACACCGGTGAAATGCCGTATGGTTGTCATATATGCGATAAGCGTTTTGCCATCAAGGTACGTCTGACCTACCACCTGCAGAAACACTATGGTATTAAACATTATTGTAAAGAATGTGGTGCCGAATTTAAttctaaacaaaaactaaaagcaCATTCATTTAAACACACTGGTATGCCATATCGTTGTGAACTGTGTGATGATCACGGATTTGCCACACGTAATAcATTTAAACGCCACTTGGATCGGGTACATCATGCTTCCATATCCGAAGAAGCTCTAAATGAAATGTTTCAACAAAACACcggtaaaactgttaaaatacGTCAGATAAACCACGAGAGTCTTGTACAGACTAACAGCGAAGATGATAATGAAAATACCCAAGAAGAAATTGAAGTTCTGGGGAAATGA
- Protein Sequence
- MTQRCRCCLTTNADIYFDIFGQYKPGTTYAENIRYLAEVQVEHNDGLPQHICSICCNEFRHIYEFGKTIRQADERLRQELLVPEKSNTEEDDVQMENVQVLDNEYFSSVDENVMQVCVIEEILEHETEQEDVIVEEIQEVEELNIMEELLDVDKESKENLLVGLAQVASTQENVNITENADASNEVFFPEDELDDNYLVEFNENEEYSHKQPKWKCGECKLILRGDVSYEGHMNIHKQIKPHQCSECQTKFRCRSALKRHKELRHSHSLQKIDITKPAYSCAECNNSFLSSSIYKLHEIIIHEKGEKCPFECNFTNNICDNLKEHVMKIHANQLDSLTKIFYNEDALTIYQCYKCSETFEKQSLLEYHMQMCEFIEEHLQEDIISLENDAKKPQSEDIYQCKICRRKLLKKNINKHMELHKRKENKEQQETNKFLCAFCPREFKNSKSLHQHEKIHQGERADIVYVCGDCDRQYASEYLLETHRKHAHKERDNICNICGNAFKMKNQLMNHMKLHLEKNIPCPHCDKKYARHFDLNVHLRSHTGEMPYGCHICDKRFAIKVRLTYHLQKHYGIKHYCKECGAEFNSKQKLKAHSFKHTGMPYRCELCDDHGFATRNTFKRHLDRVHHASISEEALNEMFQQNTGKTVKIRQINHESLVQTNSEDDNENTQEEIEVLGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -