Basic Information

Insect: Metopia argyrocephala
Gene Symbol: -
Assembly: GCA_963576795.1
Location: OY756208.1:111159774-111163849[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0018 0.22 13.2 1.2 1 23 115 137 115 137 0.96

2 9 5.4e-06 0.00067 21.1 1.1 1 23 154 176 154 176 0.98

3 9 2.6 3.2e+02 3.2 0.2 1 19 185 203 185 203 0.92

4 9 0.0024 0.29 12.8 1.5 5 23 203 221 201 221 0.95

5 9 0.19 23 6.8 0.5 4 23 230 249 230 249 0.95

6 9 0.0014 0.17 13.5 0.3 5 23 259 277 258 277 0.94

7 9 2.4e-05 0.0029 19.1 1.5 1 23 283 305 283 305 0.99

8 9 0.13 16 7.3 0.1 8 23 318 333 311 333 0.79

9 9 5.4e-05 0.0067 17.9 0.3 1 23 339 361 339 361 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0018	0.22	13.2	1.2	1	23	115	137	115	137	0.96
2	9	5.4e-06	0.00067	21.1	1.1	1	23	154	176	154	176	0.98
3	9	2.6	3.2e+02	3.2	0.2	1	19	185	203	185	203	0.92
4	9	0.0024	0.29	12.8	1.5	5	23	203	221	201	221	0.95
5	9	0.19	23	6.8	0.5	4	23	230	249	230	249	0.95
6	9	0.0014	0.17	13.5	0.3	5	23	259	277	258	277	0.94
7	9	2.4e-05	0.0029	19.1	1.5	1	23	283	305	283	305	0.99
8	9	0.13	16	7.3	0.1	8	23	318	333	311	333	0.79
9	9	5.4e-05	0.0067	17.9	0.3	1	23	339	361	339	361	0.97

Sequence Information

Coding Sequence: atgctagaatgttatccaggagggccgcgtggaggctTCCATACAATTAAAACACTGGAATCTAAACTTAATGCAAAGAATGAAGAACCAGGAGTATTTGTAAAAGAGGAATTTGAAAAAACACCGCAAATATTTGAAGAACCTACggacatgtttgaaaaaaatcttGAATGGATTAATAATGATTACGCAGATAATAAtgACAATGCGGAAAATGATATGTTTACTAAACCGGCGGAATCCACCATAAATAGTGATTTTCTTCATACTGGTGTGAATGAAGTagaaaagcctaatagcaacaataaaaaagcgGCAGTTTTCCTTGTAAAGTATGCGCTACATGAATGTGAAGTCTGCAAATATCGTTTTGCCACAGCTAGTATCTTAAAGACTCATTTATCTCAACATCAGAACTGTACTTATGGCAATTTAGCAATCCAGCCACGTCCTGAAGGCTTTAAATGTGCCGACTGTCCTAGAAGTTTTAAGAAACAAGCTTCTTTTTCAGCTCATCGTCAAATGCACAAACGAAATTTGTCAGAAGTGAACTATCCTTGCATTGTATGTGAACGCAAATTTATGACAATTAGATATTTAACTGAACACTGTTTAAAAACATTCCGTAGCGCAAGTAATTTTCGGGAACATAAGGAAAGACATATCGAATTAAAGAAGTATCAATATCCCGAATGTCCAAGTCGTTTTAAGTGTAGATCAGATTTGGCAAAACACACTTCAACACATACAAAATTTAAGCCTCACGTCTATGATATATGTGGTTCACGTTTTACCAGAGCGTATTCCTTGCAAAAACACAAACTACAGCATTCGGGTGAAAAACCCTTTAAATGTGATCAGTGCGGTATGACGTTcacatttgtatatatattaagacGCCATATTCGTACTCATACCGGTGAGAACCcctttaaatgtaaatattatgaACGTGCCTATGCTGCAAGTGGAGATTTGACTAAACATTTAAGAACTCATATAGGCGAAAATACCTATATGTGTGAACAATGCCCCATGGCTTTTAAATATCAAACCGCATTAAAAGAACATCAATCGGAACACTATAAAATGGATCAAAAACTCTTACAACAAGCACAAAAATGTCCAGTGATGCTCAAAAGCATGAATTAA
Protein Sequence: MLECYPGGPRGGFHTIKTLESKLNAKNEEPGVFVKEEFEKTPQIFEEPTDMFEKNLEWINNDYADNNDNAENDMFTKPAESTINSDFLHTGVNEVEKPNSNNKKAAVFLVKYALHECEVCKYRFATASILKTHLSQHQNCTYGNLAIQPRPEGFKCADCPRSFKKQASFSAHRQMHKRNLSEVNYPCIVCERKFMTIRYLTEHCLKTFRSASNFREHKERHIELKKYQYPECPSRFKCRSDLAKHTSTHTKFKPHVYDICGSRFTRAYSLQKHKLQHSGEKPFKCDQCGMTFTFVYILRRHIRTHTGENPFKCKYYERAYAASGDLTKHLRTHIGENTYMCEQCPMAFKYQTALKEHQSEHYKMDQKLLQQAQKCPVMLKSMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -