Basic Information

Insect: Metopia argyrocephala
Gene Symbol: -
Assembly: GCA_963576795.1
Location: OY756209.1:113763546-113767510[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.2 24 6.7 0.3 2 23 258 280 257 280 0.94

2 10 0.18 22 6.8 1.1 2 23 301 323 300 323 0.95

3 10 1.3 1.6e+02 4.1 2.4 2 23 331 353 330 353 0.95

4 10 0.0002 0.024 16.2 1.4 2 23 440 462 440 462 0.96

5 10 0.00015 0.018 16.6 5.0 2 23 470 492 469 492 0.96

6 10 0.0038 0.47 12.1 2.1 1 23 510 533 510 533 0.97

7 10 0.0019 0.23 13.1 1.0 1 23 539 561 539 561 0.96

8 10 1.3e-06 0.00016 23.0 5.5 1 23 567 589 567 589 0.99

9 10 4.7e-08 5.7e-06 27.6 1.2 1 23 595 617 595 617 0.99

10 10 0.0055 0.68 11.6 0.3 2 21 624 643 623 647 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.2	24	6.7	0.3	2	23	258	280	257	280	0.94
2	10	0.18	22	6.8	1.1	2	23	301	323	300	323	0.95
3	10	1.3	1.6e+02	4.1	2.4	2	23	331	353	330	353	0.95
4	10	0.0002	0.024	16.2	1.4	2	23	440	462	440	462	0.96
5	10	0.00015	0.018	16.6	5.0	2	23	470	492	469	492	0.96
6	10	0.0038	0.47	12.1	2.1	1	23	510	533	510	533	0.97
7	10	0.0019	0.23	13.1	1.0	1	23	539	561	539	561	0.96
8	10	1.3e-06	0.00016	23.0	5.5	1	23	567	589	567	589	0.99
9	10	4.7e-08	5.7e-06	27.6	1.2	1	23	595	617	595	617	0.99
10	10	0.0055	0.68	11.6	0.3	2	21	624	643	623	647	0.88

Sequence Information

Coding Sequence: atgaataaaaaagtaGCAACACAGAAGTGCCGGACGTGTCTTAAAACTAGTACAAAATTATTTCCACTTACAAAAATTGTGACTGGATGCTCATCAAATATAACATACGAACAGATTCTAAAGGATTGTGCACAATTTGAGtttaacacCGTTCATGAACTTCATTTGCCTCAGTATTTATGTTTTCTATGCTGCAGTCAGTTGAAGAGCACTTATATATTCGTACAACAGGCTCAGCGATGTAACCTTAAGCTTTTAAATGATATATCTAAACAATTTTGTCTCCGGGAACAGGAAATAGACTTACCACAACTACAGGATGAAGCCTCGGTTTCTATAAAACAAGAGAGTCTTGGTAGTAATATTGAATTAGAAGATCAagaaatttgcaattttattgGGAGTAAGGATAATAGTTGTAATGAAGATAATTTAGTTACAAATAGCATATTGACAACAgagcaaataattaaatatgataCCGTAAATAATTTGGGTGGcaataaagaatttataatCGAACCTATTTTAACAACAGAGCAAATAATTGAATATGATTCCGAAGTTAGTGTGGAAATGGATGACAACAAttttacaACTGAAACGAATGTAGATACTTCTGGGGAAAAGTGTGAGGAAGAAGTTCTCTTGTCAAATAAAACTAAGACTTTAGAATCTGTGGAACCTCTTGAAGGTCTTGTATGCAACAAACTTATAGCCAAGAGTGATAATGAAGCAGCATTATTTAAGGAAAAGAAAGAAACACCAGTTTCATGCGAAATATGTCTCTCCGTATATAACAGTAAGAACGAATATCTAAAgcatgtaaaagaaaaacataatagCAACCAGTCTAAAAACTTGGAAAACGGTGAAAAAGTTCAAAATGTGCCTAATCTGAAATGCAAATTGTGTGATTTTATTGGGAAAACTTATTCGGGTCTTAGTTATCACAATCGGTCCAAACATGGTACTGAGAAAGatagaaaaaaatgcaaattttgttCATACACAACTTTAAATAAGGGTTATCTCTTAAACcatgttaaaaattttcataaagaaCTGATAAAAGCTCTAAAGGCAAATACCATTACCACTACGGATGAaagCATTAacttgaataataataatatatcaaATAAGAATTGTATCACGAATGACTTGCCAACAACGCCGGGAGATGAAGATAATATTTCAGATAAAAGCAATGATGAAAAGGATGAAGAAGAGTTTAGTGATGAAGATTtcataagaaatttaataaatatgaagaaaaaaccACGAAAAAAGTTGTCAACAAAAACTTTAGTTGCACGTTGTGAAGAGTGCGGTAAAATACTAAAGAACCAGAAGACATTGGCTGATCACCAACGTCACGTTCACAAAAGTGAAGATATGTTCAGCTCATGTCCTCATTGTAATAAGAAATGTAAAAGAGAAACGGATCTTAAAATTCATATTAGACAAATGCATGGTCCTCGAGAAAATAGACAAATACCAAAGCCCAGatcaaaagaaaaacgttaTATGTGTGCAGAATGTTCATATACCTGCATGACATCAACCAAATTAAATATTCACATAAGACTTCGTCATACTGGTGAAAGACCTTATAAATGTGATCTATGCTCTAAATCGTTTGTAGTGGCGAATAGATTAAAACTCCATCGTTATTTGCATACCGGCGAAAGACCATACAAATGTCATATTTGTTCAAAGAGTTTTCGTGAACCATCGCATATGcgtaagcatattcgtttacaCTCTAACAAATATCCATTTACGTGCGACGATTGTGGAAAAGGTTTTACACAATCTTACAACTTATCGGTACATAAAAGAACACATCTTAAAGGAGAGAAACTTAATTGTTCCGTTtgtggtaaattttttaaaaatatgtctatACTAAATATacatcaaataaatgaaaatcattATGAAGAAGCTGTATAG
Protein Sequence: MNKKVATQKCRTCLKTSTKLFPLTKIVTGCSSNITYEQILKDCAQFEFNTVHELHLPQYLCFLCCSQLKSTYIFVQQAQRCNLKLLNDISKQFCLREQEIDLPQLQDEASVSIKQESLGSNIELEDQEICNFIGSKDNSCNEDNLVTNSILTTEQIIKYDTVNNLGGNKEFIIEPILTTEQIIEYDSEVSVEMDDNNFTTETNVDTSGEKCEEEVLLSNKTKTLESVEPLEGLVCNKLIAKSDNEAALFKEKKETPVSCEICLSVYNSKNEYLKHVKEKHNSNQSKNLENGEKVQNVPNLKCKLCDFIGKTYSGLSYHNRSKHGTEKDRKKCKFCSYTTLNKGYLLNHVKNFHKELIKALKANTITTTDESINLNNNNISNKNCITNDLPTTPGDEDNISDKSNDEKDEEEFSDEDFIRNLINMKKKPRKKLSTKTLVARCEECGKILKNQKTLADHQRHVHKSEDMFSSCPHCNKKCKRETDLKIHIRQMHGPRENRQIPKPRSKEKRYMCAECSYTCMTSTKLNIHIRLRHTGERPYKCDLCSKSFVVANRLKLHRYLHTGERPYKCHICSKSFREPSHMRKHIRLHSNKYPFTCDDCGKGFTQSYNLSVHKRTHLKGEKLNCSVCGKFFKNMSILNIHQINENHYEEAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -