Basic Information

Insect: Metopia argyrocephala
Gene Symbol: grau
Assembly: GCA_963576795.1
Location: OY756208.1:181544724-181547752[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.44 54 5.6 0.1 3 22 239 258 237 260 0.88

2 10 6 7.4e+02 2.0 3.2 6 23 269 286 269 286 0.98

3 10 3.9e-06 0.00048 21.5 0.2 1 23 292 315 292 315 0.97

4 10 9.4e-05 0.012 17.2 2.4 1 23 324 346 324 346 0.96

5 10 1.2e-05 0.0014 20.0 0.8 1 23 354 377 354 377 0.95

6 10 0.00042 0.052 15.1 2.0 2 23 384 405 383 405 0.97

7 10 0.014 1.8 10.3 0.2 3 23 414 435 412 435 0.94

8 10 0.00061 0.075 14.6 2.1 1 23 443 466 443 466 0.97

9 10 4e-06 0.00049 21.5 1.1 1 23 472 494 472 494 0.97

10 10 5.7e-06 0.00069 21.0 1.1 1 23 500 523 500 523 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.44	54	5.6	0.1	3	22	239	258	237	260	0.88
2	10	6	7.4e+02	2.0	3.2	6	23	269	286	269	286	0.98
3	10	3.9e-06	0.00048	21.5	0.2	1	23	292	315	292	315	0.97
4	10	9.4e-05	0.012	17.2	2.4	1	23	324	346	324	346	0.96
5	10	1.2e-05	0.0014	20.0	0.8	1	23	354	377	354	377	0.95
6	10	0.00042	0.052	15.1	2.0	2	23	384	405	383	405	0.97
7	10	0.014	1.8	10.3	0.2	3	23	414	435	412	435	0.94
8	10	0.00061	0.075	14.6	2.1	1	23	443	466	443	466	0.97
9	10	4e-06	0.00049	21.5	1.1	1	23	472	494	472	494	0.97
10	10	5.7e-06	0.00069	21.0	1.1	1	23	500	523	500	523	0.96

Sequence Information

Coding Sequence: ATGGAAGGTTCCTGTTTGTTGTGCTTAGAAGTGCAAAATTGTGGCGACCGTATAAATGGAATTAAAGCAGATACCACATCCTGGCAAGACTTGAATATAACAGAAGTTATAGAGAAACATTTTTGGCCTCTGACTGATATGTTATTGTCATCATCCACTTGGCTTTGTTTAATATGTTGGGAAAAAGTAAAAGATTTTCATGAATTCTATCTGAGTATAGAAAATGCTCATCATAATGCTGgtaaattaaaagcaattagAAAAAGTGTAACAAGTTTTGGTTATTTGGAGCCGGAAATTCTAATAAATGAACAGATTACTTCGGAAGGTAATGTAGCTGTAAAATGTGAATTTCCCCTTGATGAACCGAATCTGGACTATATACCTTTAAAACATATGCAATCAAATCCGAAATTAGTTGAAGATCCCTTAGAAAAATCAGAAATCAAGGTAAAAaaggttaaagaaaaaaaaaatttagctgATGATGAAAAGGCTGAGGGGAATGTAGAAATTAAATCGGAACCAGATGATTGCAAAGAGCTCAGTAACTCCAATGGCAATAGTGACTCTGATATGGATGACATTGAACAAGATGATGGTAACAATTCGGAAGTTAGCACATGTACAAAAAAAACTCGAACGTACACAAAAAgaggcaaaaattataaagataatgatatttttattatgaaacattttaaacaaatgatTTGTGATCTCTGTGATGTTCAATTTGAGGATTTTCCCGATATGCAAAAACACTTTTCGGACGTACATAAACAGGTCGGTTATCTTATGTGTTGTAGTCGAAAATTTTATCATCGAAATCGTTTAGTCGATCACATCCATATTCACTTAAATCCTGAACATTTTAAATGTGATCAATGTGGCAAAGTCCTTTCGGATCGTGTTCAATTAAAGAGTCATATATTGTCTGTACATCGACCGAGTGATGTAGAGTTAAAACATTTCTGTGACATTTGTGGTAAATCTTTTATCAAATCTAACGTATTACGAAACCATAAATTGACACATTTATCAAAAGAGGAGAAAAAATTTCCATGTTCAGACTGTGGTAAACAttatgcAAGTTCCTATTCACTAAAGCTTCATAGAGAAGTTATACATTTAAACAAACTTGCAAAAGTTTGTTGTATTTGTGGTCTAACATTGCGTACCAATACAGAGTATAAAGCTCATATGAACAAACATGAAGGTATTACAACAAATATGAATTGTGATATATGTGGTTTACGTGTAACCAGTGAAAGAGGATTAAAGGTTCACAAAGAAAGTCAACATCCGGTTGGTGGTAAACAAGAGCATAAGTGTAGTCAATGTCCTAAAGTATCACCTACATTGAGGGCACTTAAAAagcatttcaatacaatgcatgtAAAAGGTTATGAACATAAATGTACCTTATGTGAAAAGGCTTTTAAAAGATCTGAAGCTTTAAAGGAACATATAGCCTCTCATACTGGTACAGCCTTATATACTTGTCCTTGGTGTCCAAAAACTTTCAATTCAAATGGTAACATGCATGCCCATCGTAAACAGATACATCCTAAAGAGTGGGAAGAGGCAAAACTTCAGAAATATGTTGGAAAGGAAAGTTTGGATAGGGGAAatcattcaaattaa
Protein Sequence: MEGSCLLCLEVQNCGDRINGIKADTTSWQDLNITEVIEKHFWPLTDMLLSSSTWLCLICWEKVKDFHEFYLSIENAHHNAGKLKAIRKSVTSFGYLEPEILINEQITSEGNVAVKCEFPLDEPNLDYIPLKHMQSNPKLVEDPLEKSEIKVKKVKEKKNLADDEKAEGNVEIKSEPDDCKELSNSNGNSDSDMDDIEQDDGNNSEVSTCTKKTRTYTKRGKNYKDNDIFIMKHFKQMICDLCDVQFEDFPDMQKHFSDVHKQVGYLMCCSRKFYHRNRLVDHIHIHLNPEHFKCDQCGKVLSDRVQLKSHILSVHRPSDVELKHFCDICGKSFIKSNVLRNHKLTHLSKEEKKFPCSDCGKHYASSYSLKLHREVIHLNKLAKVCCICGLTLRTNTEYKAHMNKHEGITTNMNCDICGLRVTSERGLKVHKESQHPVGGKQEHKCSQCPKVSPTLRALKKHFNTMHVKGYEHKCTLCEKAFKRSEALKEHIASHTGTALYTCPWCPKTFNSNGNMHAHRKQIHPKEWEEAKLQKYVGKESLDRGNHSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00997976;
90% Identity: -
80% Identity: -