Marg002146.1
Basic Information
- Insect
- Metopia argyrocephala
- Gene Symbol
- -
- Assembly
- GCA_963576795.1
- Location
- OY756208.1:50548567-50553568[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0014 0.17 13.5 0.4 2 23 76 98 75 98 0.90 2 11 4.1 5e+02 2.6 0.5 1 12 104 115 104 127 0.85 3 11 1.7e-05 0.0021 19.5 2.1 3 23 136 156 135 156 0.98 4 11 5.3e-06 0.00064 21.1 2.3 1 23 162 184 162 184 0.98 5 11 0.00022 0.027 16.0 1.6 1 23 321 343 321 343 0.98 6 11 2.7e-05 0.0033 18.9 0.8 2 23 351 372 351 372 0.97 7 11 1.1e-05 0.0013 20.1 2.6 1 23 378 401 378 401 0.93 8 11 4e-05 0.0049 18.4 1.4 1 23 410 432 410 432 0.98 9 11 0.00071 0.087 14.4 0.4 1 23 438 460 438 460 0.94 10 11 0.00046 0.057 15.0 3.9 1 23 466 488 466 488 0.98 11 11 0.0017 0.21 13.2 0.5 1 17 494 510 494 511 0.95
Sequence Information
- Coding Sequence
- ATGTTATTAAGCCACTCTAAAAAGAGTTGCTGTgTAACAAATAATGACGATCAGGAATATGAAATAAATGATTTGTATTCTAGAGAAGATGAGACCAGTAATGATGGAAGGTCAGACAGTGACGTGGTTGAAATTGAAGCTACGGATAATGTTTCTGTGGCTGGCTATGACGAATCCTTCTATAGTGGGGATGACAATTACACAGAGATGCTACAAATTCAGGATGAATGTGCCATTTGTAAACTGGTATTTCCTACACAACATGAACTTGTCAGACATGCTCATGAAGCTCATCCAGATGCTAGAGCTTTTAAATGTCGGAACTGTAAAagcgttttttcaaaaatagaaTCTGTTCCTCTTCATTTTAAAGCAGTACATGGTTCAGCACCAAGGCCAGAAGCATGTCAGTATTGTAGCCGTgcattttttacaaaatctcAGTTGGAAAAGCATAAAAGGTCACATAGCGAAGAGCGACCTTTTTCGTGTGACCAGTgtggtaaaaattataaatatcaaAGAAATTTATTGGTTCATAAAAGGACCCACACAAATCATAAATCAGCAACAATGAGTATTAGCGATAGTGAGCATATGAACTTAAATGCTACTGAAGAAGAGAACTTAACAGTTAACTATGGCATGGAAGACGATAAATATTTAGATGAAACTACAATTGTTAACGAAGTGGACATTAATAATGgcgaatatacatattttattatagatGAATTAAATACAGATACAGAACAAAACAACGAAGTAGAAGGGAACGACGACGACGTAATATTTGAAGGTGAAGTAAATGAGGGTGAGGAGGATGCTGATGATTCCTATTTAAGTCCCAGATCTTTCAGAGATGTTGATCAAAATGAATGTGGTGTTTGTCTTCAGatgtTTAATTGCCAGCAAGCCGTATACAAACATGTGCATCAAGAACACCCTGatactgaaatatttaagtGCCCCTATTGTGATGATAATTTTTATAGGCATGAACTGCTAGCGAAACATGTTAAAATTCACAGCCActtgcaaaagaaaaatgtttgtcCACAGTGTTTCAAGTCGTTTGATCGTGGCAATGATTTAAGACGTCATCAACTGACTCACAGTGACGATCGCCCTTTCTTATGCGAAATCTGCAATAAAGGCTTCAAGCAGAGAAATCATTTAAAACGCCACCGAGAAATATTACATGAAAAAAAATCACAccctttaaaatataattgtacattatgtccaaaaaaattttctcgTCCCGATATTTTGAATCATCATATTAACTCGCACAATAAAAAATCAGATTATACATGTTCGACGTGTAACAATGTCTTTAAAAGTAGCATAGACTTGGAGCAGCATGAGGATCTTCATAATCATCATAAACGATTTAAATGTGGTTTCTGTTCAAAGTCTTATGATACTAATGCAAGTCTTCACCGTCATTTTCTTACCCATTCTACAGTACGGAATTTTGTGTGTTCAGTATGCAATAGAAGTTTTAAGGAAAGAAGTCATCTCAAGGgagacttTCCGGAGAGTGTCGACGCTGCAGGTCAGACCGTCTTTCGTGGGGTCGCGCCCATTCCGGGGCACCCCTCCTCAATTCGCATAACCTCTGAGCAATTGCACTGCGCTATAGGCTCCTTCGAACCATACAAATCCCCTGGTCCAGATGGCATTATTCCGGCTGATTTGCAGAATGGTGAGGATCTCAATCTCCCCTGGCTTCTGTCGGTCTATAATGCCTGTTTGGATCTCATCTATATTCCTCTGCGCTAG
- Protein Sequence
- MLLSHSKKSCCVTNNDDQEYEINDLYSREDETSNDGRSDSDVVEIEATDNVSVAGYDESFYSGDDNYTEMLQIQDECAICKLVFPTQHELVRHAHEAHPDARAFKCRNCKSVFSKIESVPLHFKAVHGSAPRPEACQYCSRAFFTKSQLEKHKRSHSEERPFSCDQCGKNYKYQRNLLVHKRTHTNHKSATMSISDSEHMNLNATEEENLTVNYGMEDDKYLDETTIVNEVDINNGEYTYFIIDELNTDTEQNNEVEGNDDDVIFEGEVNEGEEDADDSYLSPRSFRDVDQNECGVCLQMFNCQQAVYKHVHQEHPDTEIFKCPYCDDNFYRHELLAKHVKIHSHLQKKNVCPQCFKSFDRGNDLRRHQLTHSDDRPFLCEICNKGFKQRNHLKRHREILHEKKSHPLKYNCTLCPKKFSRPDILNHHINSHNKKSDYTCSTCNNVFKSSIDLEQHEDLHNHHKRFKCGFCSKSYDTNASLHRHFLTHSTVRNFVCSVCNRSFKERSHLKGDFPESVDAAGQTVFRGVAPIPGHPSSIRITSEQLHCAIGSFEPYKSPGPDGIIPADLQNGEDLNLPWLLSVYNACLDLIYIPLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -