Marg012907.1
Basic Information
- Insect
- Metopia argyrocephala
- Gene Symbol
- -
- Assembly
- GCA_963576795.1
- Location
- OY756209.1:35594938-35606329[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 7.8e-06 0.00095 20.6 1.3 1 23 596 618 596 618 0.97 2 18 0.00015 0.018 16.5 0.5 1 23 624 646 624 646 0.97 3 18 6.7e-05 0.0082 17.6 0.6 1 23 652 674 652 674 0.98 4 18 5e-06 0.00061 21.2 3.0 1 23 680 702 680 702 0.97 5 18 6.6e-05 0.0081 17.7 4.7 1 23 708 730 708 730 0.99 6 18 0.00012 0.015 16.8 5.7 1 23 736 758 736 758 0.97 7 18 5.7e-07 7e-05 24.2 4.3 1 23 764 786 764 786 0.98 8 18 2.1e-07 2.6e-05 25.5 2.4 1 23 792 814 792 814 0.97 9 18 0.00012 0.015 16.8 6.7 1 23 820 842 820 842 0.97 10 18 0.00021 0.025 16.1 6.6 1 23 848 870 848 870 0.98 11 18 1.9e-05 0.0024 19.3 4.5 1 23 876 898 876 898 0.98 12 18 7.2e-05 0.0088 17.5 8.3 1 23 904 926 904 926 0.98 13 18 3.6e-06 0.00044 21.6 7.7 1 23 932 954 932 954 0.98 14 18 1.3e-06 0.00016 23.1 7.7 1 23 960 982 960 982 0.98 15 18 0.0004 0.049 15.2 9.5 1 23 988 1011 988 1011 0.95 16 18 0.00033 0.041 15.4 0.5 1 23 1017 1039 1017 1039 0.97 17 18 0.00048 0.059 14.9 4.5 1 23 1049 1071 1049 1071 0.98 18 18 1.8e-05 0.0022 19.5 1.6 1 23 1077 1100 1077 1100 0.96
Sequence Information
- Coding Sequence
- atgaatactGATAATGTCGTTGCTAATGCAACAACTCCTGGTGAGTCAGCAACAGCGGCCGCAACATCAACATTATCGAATACGACAACAACAGCAGTAACTACATCTAATGGTTATGATCCAcagcaacaacaccaacaaaatCGTCATTCGCCTCTACAACATCATCCTCAAACCCAATTAAATGAGACGCGTGGGTCTTTAGTAATTTCCCAGTCAACACCAGAACATTATATGTCTTCGCCAAATGTTAACAGCAATCACGATGCTGGTATTAGCATTAGCCATATACCACCATCGCCTTTACCGCTAACGCAGACCACAACATCTACAACATCGTCTACAACAAATACTGTTGAGCATAAACATGCTATAACGCATTCaacaattttgttaaacaatGTAAATCCCCCAACAACTGTTGTTACACCTGAAGATGTTGCGTCGAGTTCAATTGTAGTACAAAATAGCACTACTTTAAAAACGGCTCTTGATGAACATTTACtgcatcatcaacaacaacagcagcaacaacaacatcatcaacatcatcatctaCATCACCATTTGAATCAATCTCCAAATACAACATTATTGGTTAGTAATTCTGGAACACCACCCGGAACACTCTTAGCCaataatacacaaaatTTGGGGAAATATTGGGTTGTGACCAACTTATTTCAAGGAGCAGCCGGTCAAGCTGTCCCTTACAACGAGGGAGGAATAACCCACACACATACTTCTATAGCAGGAGTGCCTTCAACAACATTAGTGCGTACAATTTCAACAACTGCTGGTAGTACAACGGCAGTACCTAAGAGTGAAGTTATTACTAGCAGTGCAGGAACGCTGCATTTACCACAAGCACAAATGTTATCACAAGCGGCTATAGGTCAACAATTGCCAAATGGCACTATAATAACTCaggcacaacaacaacaacagcagcagcaacaacaacaacaaaggcTTGTTACAGAACATCAGCAGCAGTTACATGTACATGGTTTAAGTAATGCAGAAGAAAATcatcaacagcagcagcaacagcagcaacaacaaatgacccaacaacagcagcaatcaCATGTTGCAGTTCTTCAAACAGGCGAAACTATAAAAGATGAAAAACCTTTTACATCAAATGGCAAGATATCTGCAACCAATCAACAGATTATTATGCAACATATATCGACCACAGCATCATCTGTAGCACCAACTACATCAGGAGCCACTACTATAACACTGGGTACGCCAAAAACCGAAATAAAAGAAGATGGTAGCGTTGTTACGAGTGGTGGTAAACTTCACCCTGGCATTGaaatgtataaagtaaatattgaagatTTATCTCAACTTTTTACGTACCATGAGGTCTTTGGTAAACTTCATGGTGATGTTACAAATCATCCTCTAGCTGCAGCTCATGTATCCTTACCAGCTGCTGCAAATAATAATATCGCTGTGGCAGTTTCTGCAACAACAACTAGCTCAGCTGAGATTAATAATGCTACAGGTGCAGCTGTACTGACAAATAGTGCCCCTATTACTGAATCTACCAGTAGCAGCAGTTCCGTTGTCACTGGAGCTGTCGCTACAACAAGCATAGCCGCTACAACAGCAATTGCGTCAAATTCAAATGCAGTGGCAACAGCAACAACCACCACTGCGGGTGTAACTGCTGGTGGTCTCTTAATGCCTAAAATGGAAGGAGGTATTACAAATGTAGATCAAACTACTGTTACATTAGCTCCTGATGGTACGGTGGTGTCGACGGGTGAACATGTTTGCGATATATGTGGGAAAATGTTTGCTTTTCGTTACCAATTAATCGTCCATCGTCGCTATCATACTGAACGTAAACCTTTCAACTGTCAAGTCTGTGGTCAGGGTTTCTTTACCTCTCAGGATCTTACACGCCATGGAAAGATTCATATTGGTGGACCCATGTTTACCTGTTTAGTGTGCTTTAATGTTTTTGCCAACAATGCCTCTTTAGAACGCCACATGAAACGTCACTCGACCGACAAGCCATTTGCTTGCACAATATGTCAAAAGACATTTGCGCGTAAAGAACATTTAGAAAATCACTTTCGTTCGCACACCGGTGAAACTCCATTCCGTTGTCAATATTGTGCTAAAACATTTACACGTAAAGAACATATGGTAAATCACGTACGTAAACATACAGGTGAAACTCCACATCGTTGCGACATATGTAAGAAATCATTTACGCGTAAGGAGCACTATGTTAATCACTATATGTGGCACACTGGCCAAACTCCCCATCAGTGTGAAGTGTGCGGGAAAAAGTATACTCGCAAAGAACATTTAGCAAATCATATGCGTTCACATACAAATGATACACCATTTCGTTGTGAAATATGTGGCAAAAGTTTCAGTCGTAAAGAGCATTTTACTAACCATATACTATGGCACACAGgaGAAACTCCCCATCGTTGTGATTTCTGTTCAAAAACGTTTACACGCAAAGAACATTTGTTAAATCATGTTCGTCAACATACTGGCGAATCACCTCATCGGTGCACATATTGTATGAAAACATTTACGCGCAAAGAACATTTGGTCAATCATATACGTCAGCATACTGGTGAAACACCCTTCAAGTGCACTTATTGCACCAAAGCTTTTACACGTAAAGATCACATGGTTAATCATGTACGGCAACACACTGGAGAATCACCACACAAATGTACGTTTTGTACAAAAACCTTCACGCGCAAAGAACACTTAACAAATCATGTGCGCCAACATACGGGGGAGTCTCCCCATCGTTGCAGTTATTGCAAAAAGACCTTTACCAGAAAGGAACATCTGACAAATCATATACGATTGCATACTGGTGATTCGCCGCACAAGTGTGAATATTGTCAGAAGACATTTACTCGCAAGGAACATCTAAACAATCATATGCGTCAGCATTCTAGTGATAATCCACACTGTTGCAATGTTTGCAACAAGCCATTTACGCGCAAAGAACATTTGATTAATCATATGTCACGTTGCCATACTGGAGATCGACCATTTGCTTGTGAAACTTGTGGCAAATCTTTCCCTCTTAAGGGCAATTTACTCTTCCATCAACGTAGTCATACCAAGGGACAGGAAATGGAAAGACCATTTTCATGTGAAAAATGTCccaaaacatttatttgtaaaggtcATCTGGTGTCCCATATGCGTTCTCATTCCGGTGAGAAACCACACGCATGCACCTTATGCAGTAAAGCATTTGTGGAGAGAGGCAATTTAAAACGTCATATGAAAATGAATCATCCCAATGCTCCAATGCCACCACCCCCAGTGCCACATCCGGTTATACCAGCAGGTGTAGTGCCTCAAATTAAACAAGAAATTAAACCTGTTATTACTGAATTAAATCCCCTACAAACTACAGCACCCACAATGCACACTATACAACAAATAACAGCTGGGGCAGCTGCAAATGCAGTTCAATTAACAACGGGTTTAACTCCAATGGTAACATCAACAATTACATCGCACTCTGCACAGAAACAACCAACGCCACCACAGACTCAAGtccaacagcaacaacagcaattacaacagcaacagcaacaagtTGTTAATGCACACcatcagcaacaacagcagcagcagcaacaacaacaacaacagcaacaagtGGCAGCTCACCAACAGGCTttacagcagcagcagcaacaacaccaacaaaatCAGTTATTGCAATTGTCAATTCAGCAGGCAGCAGCTGCCGCTGCACATCAACAACTACAACACCAAGAGCAACAACGCCAACATCATcaccaacagcagcaacaacaaggCCAACAACAAGCTCACCATCAACAACAACCAGCTTCAAGTGTTACTGTCGTTTCCAGTAatcatcaacagcaacaacagccaTCGCAACAACCGCAACAGCAACCAACACAaacacaacagcaacaacaacagcaacagcctACACCACAAGTGCCAATCGCTTTGATACAATCGGATCAGGGAGTTTTGGCCCGTGCCACCATGCAAATACAGCATATGCCCACTAATGTTGAACAACATCCTGTTGTGTACTAA
- Protein Sequence
- MNTDNVVANATTPGESATAAATSTLSNTTTTAVTTSNGYDPQQQHQQNRHSPLQHHPQTQLNETRGSLVISQSTPEHYMSSPNVNSNHDAGISISHIPPSPLPLTQTTTSTTSSTTNTVEHKHAITHSTILLNNVNPPTTVVTPEDVASSSIVVQNSTTLKTALDEHLLHHQQQQQQQQHHQHHHLHHHLNQSPNTTLLVSNSGTPPGTLLANNTQNLGKYWVVTNLFQGAAGQAVPYNEGGITHTHTSIAGVPSTTLVRTISTTAGSTTAVPKSEVITSSAGTLHLPQAQMLSQAAIGQQLPNGTIITQAQQQQQQQQQQQQRLVTEHQQQLHVHGLSNAEENHQQQQQQQQQQMTQQQQQSHVAVLQTGETIKDEKPFTSNGKISATNQQIIMQHISTTASSVAPTTSGATTITLGTPKTEIKEDGSVVTSGGKLHPGIEMYKVNIEDLSQLFTYHEVFGKLHGDVTNHPLAAAHVSLPAAANNNIAVAVSATTTSSAEINNATGAAVLTNSAPITESTSSSSSVVTGAVATTSIAATTAIASNSNAVATATTTTAGVTAGGLLMPKMEGGITNVDQTTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVVPQIKQEIKPVITELNPLQTTAPTMHTIQQITAGAAANAVQLTTGLTPMVTSTITSHSAQKQPTPPQTQVQQQQQQLQQQQQQVVNAHHQQQQQQQQQQQQQQQVAAHQQALQQQQQQHQQNQLLQLSIQQAAAAAAHQQLQHQEQQRQHHHQQQQQQGQQQAHHQQQPASSVTVVSSNHQQQQQPSQQPQQQPTQTQQQQQQQQPTPQVPIALIQSDQGVLARATMQIQHMPTNVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313142;
- 90% Identity
- -
- 80% Identity
- -