Marg003813.1
Basic Information
- Insect
- Metopia argyrocephala
- Gene Symbol
- -
- Assembly
- GCA_963576795.1
- Location
- OY756208.1:87047428-87048147[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-08 8.1e-05 23.4 0.0 2 38 12 48 11 53 0.92 2 2 0.79 1.9e+03 -0.2 0.0 24 36 164 176 164 182 0.83
Sequence Information
- Coding Sequence
- ATGCCAAAAAAAGGAGCAATTAGAAAATGGGAACCGGAAAACATGAAACAAGCCGTCGAAAAGGTTAAAAACAACGAAATGGGAATTAAATTAGCCTCAAAGACCTTCAATGCTCCTCACACAACACTTCATAGGATTGCCAGAAGTGAAGCCAGCCTCACCGATCTTCTCTCAACACCAAAACCAACTTTAAGCAAACAAATGGAGTCTGACTTGGTAAAATATGCTCTTGAAATGGAAAGTCGTTATTGGGGACTAACTCGGAGCGATATCAGGTCGCTTGCATTTCAACTTGCAAAACGTAATggcattcaaaataatttttccgtTTTGAAAGAGTGTGCTGGCAAAGACTGGCTGTACGGATTTTTGAGACGGCATAAAAATCAGTTAAGCATACGTACCCCAACTGGTACTTCCTTTGACAGAGCTAAAGGCTTTTCGCGTGAAAatgttcaattattttttgacaTTCTGGAGAatgaatataatatatacaaCTTTCCTGAAACCTCCATATGGAATGTGGATGAAACTAGTCTTTCCATTGTTCAGAATAAATTTCCGAAAGTCATAACGAGTAAGGGAAAGCGACAAATAGGTGCAATGACATCTGCTGAACGTGGCTCGCTAATTACAGTTATAACATTTATGTGTGCGGGTGGCTCATTTGTACCACCCTTTTTATATTTCCGCGAAAAAATGACAACCCACAATTAA
- Protein Sequence
- MPKKGAIRKWEPENMKQAVEKVKNNEMGIKLASKTFNAPHTTLHRIARSEASLTDLLSTPKPTLSKQMESDLVKYALEMESRYWGLTRSDIRSLAFQLAKRNGIQNNFSVLKECAGKDWLYGFLRRHKNQLSIRTPTGTSFDRAKGFSRENVQLFFDILENEYNIYNFPETSIWNVDETSLSIVQNKFPKVITSKGKRQIGAMTSAERGSLITVITFMCAGGSFVPPFLYFREKMTTHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00997652;
- 90% Identity
- iTF_00997652;
- 80% Identity
- -