Basic Information

Gene Symbol
stc
Assembly
GCA_030523125.1
Location
JAPYZG010000542.1:46939-50979[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 1.8e+04 -4.3 1.6 15 19 491 495 490 495 0.81
2 16 0.065 5.7e+02 0.6 0.2 4 10 524 530 523 532 0.95
3 16 2.2e-06 0.019 14.9 9.8 3 18 540 555 539 556 0.95
4 16 0.00085 7.4 6.7 14.9 1 19 592 610 586 610 0.86
5 16 0.39 3.4e+03 -1.8 0.6 1 5 619 623 619 628 0.82
6 16 0.98 8.6e+03 -3.1 0.8 5 10 637 642 637 642 0.93
7 16 1.6e-08 0.00014 21.8 16.4 1 19 648 666 648 666 0.99
8 16 1.4 1.3e+04 -3.7 1.4 5 10 695 700 695 700 0.93
9 16 4e-06 0.035 14.1 15.0 4 18 713 727 706 728 0.86
10 16 1.5 1.3e+04 -3.7 2.0 5 10 757 762 757 762 0.93
11 16 0.76 6.7e+03 -2.8 15.9 1 11 768 778 768 790 0.88
12 16 6.2e-10 5.4e-06 26.3 13.0 1 18 795 812 795 813 0.97
13 16 0.38 3.4e+03 -1.8 0.5 5 10 841 846 840 847 0.92
14 16 2 1.8e+04 -6.2 10.7 10 19 860 870 849 870 0.76
15 16 7.4e-07 0.0065 16.4 14.3 1 16 906 921 906 932 0.86
16 16 5.3e-06 0.047 13.7 13.3 1 19 938 957 938 957 0.95

Sequence Information

Coding Sequence
ATGGCCACCTGGGATGGCTCCTACCAAGCAGATCCACCCAGTGACGACTTCTATTACATCCGTTCAAATCCACAAAATAGCAGGGCTGATGGAAATTCTTGGAATTATTGCAATCAAACAAATCACGTAGTGGATACAAACCCATCATCGGCAACACCACTCAATGTCACGGAATCTTCAAATGATCATCTAGAAAACATAAATGCGTTTACAATCGAAGTTGATAACGATTCGCGTGGCAATTCCGATCGTTCATGTAAGAACCGCAAATATAATGAGAAACTCCTCTCATTTCATGATCAAATTCATGATACAGACGAATTGAGTGTGAATTATATCGATGAtcatgttataaataattccaaattaCATCCGGGTGCCAATGAATTCATACCATCTGGATGTGCTTATGTGGACACTTCAAAAGTTTTCTTTGCTGATAACAAAAATAGATACAACAATcgtaaatttgataataaacgAAATGATGGTATCAATCAGCGTCAACATGAGGAAGAATTCCAgcagaaaatattcagaagTAACGACAAAAgtcgaaaaaataatactgcTCATCAGGCGTCGCATTCTAGTTCCGAACCTCATAAAATGGGTCAAAACCATTCAAACAACTCTCATGATAACGATGAGGAATTGATCGGCAATGCAAATCTAAAAGATAATTCAATAAGAGATCCTTATAAGGGCCGTAGGGCACATAGCCATGGGCGATTCCAAAATGATCGTTATATTGCCAATCGCCACTTCAATACTTCAAAAAGTTCATCGCTACATTATCCAAACAGttctaataaacaaaaaaaatataccgcATTGAATTTCACAAATGATGTGCAATCATGTGAGACCGAGAAGCAGTCAAAGAGTAAACAtcgaattggaaaaatttgtgaaGATCCTCGCGACAATAAATACCGTGAAAGCATTGAAACTAGTAATAATGATTGTGTTGAAAATGGTGGTCTAAGAAAAGATAAGAAACGTGGTATCAGAGGCAAAGACTCGACATATAGTGAAGATCCACGCGACGAACGATATCGTAGCAAAAAGAATTtctatgaagaaaaatcattcaagGACAAACGCTTAAATTATCAAGAATACAATGGTTACAAAGGTTACGAACGCAATTCCAAACCAAAAATCGATGATAGCAAATACAAAGATGAATCAACGAGTCAATCAGCCGATAGAATGACGAATTGGCGAAGAAGCAATCATtcaaatgagatgaaaaaaaatatcggaaGAATGGATTTGGACGATGCGGCAAGTCAAAAAGAACGATTAACAGATCAATTGAACAGAGGTCATTTAGAGTGCCTTGTGTGTTGCGATAATATAAGACAAAATGATGCGATATGGTCATGTAAAAATTGCTATCACGTATTGCATTTAAAATGTATCAAGAAGTGGGCAGAATCATCACAGAGTGAAAGCGGTTGGCGATGTCCAGCTTGTCAGAATATGAATGAGGTTATCCCTCAtgattatttctgtttttgcGGAAAAACACGTGATCCGGAATGGAACCGTCGTGATATCGCTCATTCGTGTGGCGAAGTATGTGGTCGTGCACGTGcaaaaaacaattgtattCACAAATGTACATTACTATGTCACCCCGGATCATGTCCATTGTGTATAGCAATGGTAACACGCCATTGTGGTTGTGGTGCAATATCACAATCTTTCAAGTGCAGTACCGACACCCAATTTTCGTGTGATTCAATTTGTGGAAAGTTACTCAATTGTCAAATACACAAATGTCAACGTAAATGCCATCATGATAATTGTGGTGCGTGCCAAAAAATGGTTCATCAAGAATGCTATTGCGGTAAGCATAACCGTGATGTACTATGCCAAACAAATACACCAACCATCTATAAATGCGATCaaatttgtgataaattgCTTGAATGTGGCAATCACAACTGTAAGGAAAAATGTCATCCAGGTGAATGTCGTGAATGCCCACTGAAACCACAAAAGGTAACGCATTGTTGTTGTGGCCAATCATTATTAACCATTCACCGGCAGGATTGTTTAGACCCCATTCCAACTTGTGATAAAACTTGCACGAAACGTTTACGGTGTGGGCAACCAAGTAAACCACATACATGTCAATCTAACTGTCATCCAGGTGACTGTCCGCAATGCGAATTGACAACTTGGGTAAAATGTCGATGTGGGAATATGGATCGTGAAATCCCTTGTGCTGATTTGACCACGAAAGCTGATGATGCgagatgtgaaaaaaaatgcacaaaaaaaagatcatGCGGTAAGCACAAGTGTAATCAGCACTGTTGCATCGATATTGAACACATTTGCCCATTGCCATGTTCAAAAACGCTAAGTTGTGGTAAGCATAAATGCGAATTAACGTGTCACAAAGGACGTTGTCAGCCGTGTTATCAAAGTAGTTTCGAGGAATTATATTGCGAGTGTGGAGCAGCTGTTATATATCCACCTGTAGCATGTGGTACACGACGACCAACATGTAGTCGTCCATGTTCTCGTCAACATGAGTGTGGCCATGAGGTATTGCATAATTGTCATAGCGAGCCAAATTGCCCGCCATGTACTGTTCTCACTCAGAAGTGGTGTTACGGAAAACATGAATTAAGGAAAGCAGTGCCatgttatttcaatgaaatttcatgtgGAATGCCATGTGGTATGCCACTGGTATGTGGAAGACACAAATGCATTTCTCTGTGTCACCCAGGATCTTGCAAAAAACCAGGACAAATATGCACTCAACCGTGCACAATACCACGAGAAATGTGTGGACACAATTGTGCTGCGCCATGTCATGAAGGGAAGTGCTCCGACACTCCATGCAAAGAGATGGTGAAAGTAACATGCACGTGCGGGAATAGAAGTATGACAAGGGCTTGTGCTGAAAATTCACGCGAATATCAAAGAATAGCCAGTGGTATTCTAGCGAGTAAGATGGCAGACATGCAACTTGGTCATTCTGTAGATTTGGAGGAGGTATTTGGTCAAGGGGCTaagaaacaaaatcaattaaaaacttTGGAATGTAACGATGAATGTAGAACTATCGAAAGGAATCGTAAACTTGCATTAGGGCTACAAATTGTAAATCCCGATTTGAGTGGAAAACTTTTACCACGTTATACCGACTTTATGAAACAATGGGCCAAGAAAGACCCGAATTTTTGTCAAATGGTCCATGATAAACTCACGGAATTAGTTCAACTCGCTAAGACTTCGAAACAGAAATCCAGGAGCTATTCATTTGACAGTATGAACAGGGATAAACGGCATTTTGTACATGAGGCTTGTGAGCATTTCGGCTGTGAGAGTCAAGCATATGATCAGGAACCAAAACGCAATGTAGTGGCAACCGCCATAAAAGATAAATGCTGGTTGCCAAGTTATAGTTTATTGGAAATGGTTCAGAGAGAAAGTGGACAGCGCAAAGTTCCAAGACCAATGCTCAATATAGCAAAGACCAACATTTCATCTTCCAGGACTTCCGAGGTTTTGCCGTCAACTGCCAAAAAGAGCCAAAAACTTCAACCAACCACTTCTTCTAGATCACCGGACCAAGAAATTGATTACTTTGATTTCCCAAATTCGAAATGGAGCTATACATAA
Protein Sequence
MATWDGSYQADPPSDDFYYIRSNPQNSRADGNSWNYCNQTNHVVDTNPSSATPLNVTESSNDHLENINAFTIEVDNDSRGNSDRSCKNRKYNEKLLSFHDQIHDTDELSVNYIDDHVINNSKLHPGANEFIPSGCAYVDTSKVFFADNKNRYNNRKFDNKRNDGINQRQHEEEFQQKIFRSNDKSRKNNTAHQASHSSSEPHKMGQNHSNNSHDNDEELIGNANLKDNSIRDPYKGRRAHSHGRFQNDRYIANRHFNTSKSSSLHYPNSSNKQKKYTALNFTNDVQSCETEKQSKSKHRIGKICEDPRDNKYRESIETSNNDCVENGGLRKDKKRGIRGKDSTYSEDPRDERYRSKKNFYEEKSFKDKRLNYQEYNGYKGYERNSKPKIDDSKYKDESTSQSADRMTNWRRSNHSNEMKKNIGRMDLDDAASQKERLTDQLNRGHLECLVCCDNIRQNDAIWSCKNCYHVLHLKCIKKWAESSQSESGWRCPACQNMNEVIPHDYFCFCGKTRDPEWNRRDIAHSCGEVCGRARAKNNCIHKCTLLCHPGSCPLCIAMVTRHCGCGAISQSFKCSTDTQFSCDSICGKLLNCQIHKCQRKCHHDNCGACQKMVHQECYCGKHNRDVLCQTNTPTIYKCDQICDKLLECGNHNCKEKCHPGECRECPLKPQKVTHCCCGQSLLTIHRQDCLDPIPTCDKTCTKRLRCGQPSKPHTCQSNCHPGDCPQCELTTWVKCRCGNMDREIPCADLTTKADDARCEKKCTKKRSCGKHKCNQHCCIDIEHICPLPCSKTLSCGKHKCELTCHKGRCQPCYQSSFEELYCECGAAVIYPPVACGTRRPTCSRPCSRQHECGHEVLHNCHSEPNCPPCTVLTQKWCYGKHELRKAVPCYFNEISCGMPCGMPLVCGRHKCISLCHPGSCKKPGQICTQPCTIPREMCGHNCAAPCHEGKCSDTPCKEMVKVTCTCGNRSMTRACAENSREYQRIASGILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECRTIERNRKLALGLQIVNPDLSGKLLPRYTDFMKQWAKKDPNFCQMVHDKLTELVQLAKTSKQKSRSYSFDSMNRDKRHFVHEACEHFGCESQAYDQEPKRNVVATAIKDKCWLPSYSLLEMVQRESGQRKVPRPMLNIAKTNISSSRTSEVLPSTAKKSQKLQPTTSSRSPDQEIDYFDFPNSKWSYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01560815;
90% Identity
iTF_00996719;
80% Identity
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