Mcol006669.1
Basic Information
- Insect
- Meteorus colon
- Gene Symbol
- -
- Assembly
- GCA_030523125.1
- Location
- JAPYZG010000997.1:2718-5672[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.1 98 3.7 0.4 2 21 135 153 134 154 0.90 2 13 0.00082 0.077 13.5 1.3 2 20 161 179 160 182 0.94 3 13 0.00096 0.089 13.3 0.6 1 23 188 211 188 211 0.91 4 13 3e-06 0.00028 21.2 0.9 1 23 217 239 217 239 0.98 5 13 0.00032 0.03 14.8 0.3 2 21 419 438 418 439 0.93 6 13 0.00017 0.015 15.7 3.5 1 20 461 480 461 483 0.93 7 13 0.00021 0.019 15.4 1.0 1 23 488 511 488 511 0.95 8 13 1.4e-06 0.00013 22.2 0.3 1 23 517 539 517 539 0.98 9 13 0.0019 0.18 12.3 6.3 1 23 546 568 546 568 0.98 10 13 0.00033 0.03 14.7 0.4 3 23 576 596 574 596 0.97 11 13 0.00037 0.035 14.5 0.2 1 23 602 625 602 625 0.96 12 13 1.9 1.8e+02 2.9 0.2 1 23 639 661 639 661 0.87 13 13 1.9 1.8e+02 2.9 0.0 2 23 962 983 961 983 0.93
Sequence Information
- Coding Sequence
- ATGGAAACGCACGGGGATGGAAAATACATCACATTTCCAGTTATGCCAGAAGTACGCGAGATAatgcaacaacagcaacagcagcagtacaatattattgcatcacatgaaaaaatttgtgattcaACAGAAGAATGTGAGATTCGGAATGGTTTGACAGCAGTAGTCACTTCTCGCAATGCCGCTACTGAAATTGCCGAAGTTCAAGTATCACAAGTGACACAAGTAGCCGTCGAAATATTAACCGGGAAACCAGACCGAAGTGAAAATCAAGTTGTCTATCCTATTTATATCAAGCAAGAAAATCAACCCCAATATACATCAGCTGAAGATGAGTCTATGGCGGTAGAAGCATTGCGACAACTTGGTGGCATGTATCCATGTtttgaggataaaaaaataagctGTCCCAACTGCAACAATATCTTCACTGAAGCCCAAATGCATAAACATAAACGATTATGTGTTtcggaaaaattgatttgcaCAACATgcaatgaaacatttgaaagaaaaattgacttGAACAACCATATGGTTTGTCATCAGATTGATCGGCCGCATGCATGTCGTACTTGTGGAAATTTATTCCGTTCTAAAGTCAATCTTCAAGCTCACATGGTACAAGCACATCAATCAGGAAAATCACACAAGTGTACAATTTGCGGTGCCGATTTCCAAAGACCATCAAGTCTGTCAAAtcacatgaaaattcatacgTACGTTGCTGGGCGGGCAATAGCATCACAAACCACCACCAGTTTCATTGATCAAACATCTGAGTCTGTGAAAAAATGGAGTGAAAATGATCATTGTGAATCACAATCCAACATCATCTCGTCAGATCAATCATCATCCGTTCAAACGGTTCAGAATTATGACGTTGCTCAGGTACAATGGTCAGTCccatcatattcatttcaaaatgatcATACGAATCATACTGTCGTCAATCATGACGAAAAAATGGATAGTACATTGCAGGGATTTGCAGTAATGTCGAATGGAGAAGTAACACAATTCGAATATACACAACAAAATGCTGTCgataatcaaaatttatcgCAGGATTACGAACTGAGCATAGCACCTTTTGATACTTCTGATGAATTAGTGAAAGCAGAAATAATACCATACACACAAAAAGAACTCAAATCACATACATGTGGTGAATCGggtattaatttttctcgaATCACACCATTATCTGCACATGAGAATGTGAATACCACGAAAATATGGTCAATGCCAATTGAATGCGAATATTGTGATAAGCAGTTCCAAGACGCTAATCATTTAGCTTCACACCAAACAACTTGTGCAAAAAAGCTGATGCAGAACAATGTTGAGCACGGcgtgataaataataaatggggCAAGCATTCGTGCACTgactgtggaaaaaaatttacaacaaaGCAAAAAATGTTCCGACATCAATGgattcatcgaaaaaaaacacattcatGCGAAGTATGCGGCACACAATTCGAGAAACAAAGCCAATTAGACAATCATCGACTATCAGCACACCCAGGTGATTCGCCATTCACTTGCAGCGAATGTGGTAAGAGTTTCGTCTCTAGACAAGGTTTATGGGAACATGGAAGAACTCACGCTGGGAGTCCGGCACATTTCCACTGTGATACATGTTCAAAAACATTCTCATCGCGACAAGGCTATCTTATACATCATCGTACTCACACAGGAGAACGACCATATGGATGTAAGTTTTGTTGGAAAGCATTCAGGGACGGTGGTACATTGAGAAAACATGAGAGGATCCATACAGGCGAACGGCCACATGTATGTCCACTGTGCTCACGTGCATTCAACCAAAAAGTCGTATTAAGAGAACATGTCAGATGGGTTCACGCAGCAAGTAAGAATGATTCAGATGTTGTTGGTCCACCGTATGCCTGTCCACTTTGTGGTTCACTTAATCAAGATAGAGACGAATTGTGCGCTCATATTGTCAAACATTCAGATAAAATGATTGCTGAAGCGAAAGCTAAAATCAATATTACACCCAAAACAAAGTCGGCAAAGaataaaagaacgaaaaatacATTAGGATTAAATCAAGACGATACGAAATTGAATATACGGAATGTTAAAAACGGTGAATTACTAACAGTTGATAGCGGAGATAATAATCTTGAGGGTCATATCATCAATACTAAACAAGGCGAAACTTTGTTACTAGTTACCACTGATACACATTCAATTGCCTCAACTTCTGacagtgagaaaaataatgagcataattttcaatgtcatGAAACCGAATCACTCAATTTAATAACCATTGGAAAACAAGatgatacaaatattttactcCCTTCAGACGAACAAACTATCATTCATGCaataacaaatagaaataacgACATGAGTACACTATTCATCCCTACATCGGATCAAACAGAGGCTGTTCATCTAATAACAGCGACTTCTGGGAAGCAAAATAATACGCTACATTTGATAACGAAGCAAAATGAATCACTCATGTCTGTACACAAGAACgcgatgaaaaatgtaaatctGTCAAACACCATAGAATTAATCGATGAtccacatataaatacaatgaacaTCATCACAGCAAATGTTCCGGGGCAAGAAGAAAACGGTCaacagaaaaattctattgCATCCGATACAGTTCAAGTCAGCCATTATCAACGAGGCAGTGATAtcgatgaagatgatgatgatgatgatgatgatgataatgatgatgatgataatgatgatgacgatatCAATGATAATGGTAATGACAATGGCGaggatgataataatgataaaattgaagataatgtTGATCGAgcaaacaatgatgaaaatgatgataatgatgacgatgacgatgagcAACTCATTTGTGGAATTTGCGGTGACGATTTCGGTGATAAAACTATTCTTATGGAACACGTGAAAATCCATATATAA
- Protein Sequence
- METHGDGKYITFPVMPEVREIMQQQQQQQYNIIASHEKICDSTEECEIRNGLTAVVTSRNAATEIAEVQVSQVTQVAVEILTGKPDRSENQVVYPIYIKQENQPQYTSAEDESMAVEALRQLGGMYPCFEDKKISCPNCNNIFTEAQMHKHKRLCVSEKLICTTCNETFERKIDLNNHMVCHQIDRPHACRTCGNLFRSKVNLQAHMVQAHQSGKSHKCTICGADFQRPSSLSNHMKIHTYVAGRAIASQTTTSFIDQTSESVKKWSENDHCESQSNIISSDQSSSVQTVQNYDVAQVQWSVPSYSFQNDHTNHTVVNHDEKMDSTLQGFAVMSNGEVTQFEYTQQNAVDNQNLSQDYELSIAPFDTSDELVKAEIIPYTQKELKSHTCGESGINFSRITPLSAHENVNTTKIWSMPIECEYCDKQFQDANHLASHQTTCAKKLMQNNVEHGVINNKWGKHSCTDCGKKFTTKQKMFRHQWIHRKKTHSCEVCGTQFEKQSQLDNHRLSAHPGDSPFTCSECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAASKNDSDVVGPPYACPLCGSLNQDRDELCAHIVKHSDKMIAEAKAKINITPKTKSAKNKRTKNTLGLNQDDTKLNIRNVKNGELLTVDSGDNNLEGHIINTKQGETLLLVTTDTHSIASTSDSEKNNEHNFQCHETESLNLITIGKQDDTNILLPSDEQTIIHAITNRNNDMSTLFIPTSDQTEAVHLITATSGKQNNTLHLITKQNESLMSVHKNAMKNVNLSNTIELIDDPHINTMNIITANVPGQEENGQQKNSIASDTVQVSHYQRGSDIDEDDDDDDDDDNDDDDNDDDDINDNGNDNGEDDNNDKIEDNVDRANNDENDDNDDDDDEQLICGICGDDFGDKTILMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00996553;
- 90% Identity
- iTF_00996553;
- 80% Identity
- -