Mcol004026.2
Basic Information
- Insect
- Meteorus colon
- Gene Symbol
- -
- Assembly
- GCA_030523125.1
- Location
- JAPYZG010000411.1:72180-75574[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0011 0.1 13.1 1.0 3 23 472 492 470 492 0.95 2 15 0.00056 0.052 14.0 1.8 2 23 503 525 503 525 0.94 3 15 0.00061 0.056 13.9 0.1 1 23 532 554 532 554 0.98 4 15 4.5e-06 0.00042 20.6 2.6 1 23 560 582 560 582 0.96 5 15 8.6e-05 0.008 16.6 3.8 1 23 591 613 591 613 0.97 6 15 3.4e-06 0.00032 21.0 0.8 1 23 619 641 619 641 0.98 7 15 9.9e-07 9.2e-05 22.7 0.3 1 23 646 668 646 668 0.98 8 15 0.056 5.2 7.7 6.1 1 23 675 697 675 697 0.99 9 15 0.0003 0.028 14.9 0.2 2 23 717 738 716 738 0.97 10 15 0.00022 0.021 15.3 0.7 2 23 746 768 745 768 0.96 11 15 0.0024 0.22 12.0 0.9 1 23 774 796 774 796 0.97 12 15 0.022 2.1 9.0 5.5 1 23 802 824 802 824 0.98 13 15 5.8e-06 0.00054 20.2 0.3 1 23 830 852 830 852 0.98 14 15 1.8e-06 0.00017 21.8 2.3 1 23 858 880 858 880 0.97 15 15 0.0073 0.68 10.5 0.2 2 23 887 909 886 909 0.86
Sequence Information
- Coding Sequence
- atgaaaattgtttgtgcAGCGCCGTCTTGCAAATATTCGGCGGAAAATGAAGATTCGagcgatattattttcatcagtttcCCTGATGATGACACGTCTACAGTATGGGCCCACAATTGTGGTCGGCCAGATCTcattatcaaatcaaatagaGAATTACATTTGAACTACTATGTTTGTTCAAATCATATTGAGGACCACTATTATTTGAGCAAAACGAACGATATAATGATCGCACAAGGCGCAATACCGACTTTATTCCGATCAAATAGTGAATCCCCTGAACATTTCACATCATTGGAGGAGCAGTATTCATCTTCCGATCATGTTATTGACTCATTACAATTGAATGACTGCATCGATACAGTGAACAGCAACTGTCCTCCGAGTTTTGTTGATAATGCAAGTAGTTCCGATTATCCAACGACAATTTATAATGCTGAGTTACACAATTCCAACAATGAGAATGATGATAGAGATAACCAAGATGAGAGACAagttaatgatgataataatctgaatttttgtaatataaatatgaatatagatCATTTTGATGGGATGACAATAAGATTTACAAATTTATGTCGTATCTGTGGGCAATCAGCGCCTGATGGAATTGATATTGTTGGAGATCGCGCCATTGAGCTGAAGttaaaagataaaattcatctGCATTTACCGATAATCGTTGAAATTCATGACGATGATATTTTACCACAAAAAATGTGCTCAGACTgccatgaaaaattggaagtgTTCCACTCTCTAGTCATAACATGTCTGCAGACGGATATACGCCtaaggaaatatttgaatcttCCTAGCAAGTACAATAATGAGGAAagattccaagaaattatatCAGCCAATGAATTGGAaacgaataatgaaatgtgtACTGGGAATTCGTCGGATGAACAAACGCCATTCATTGCCAATAAATCGAAAGACTTGCCTCCAGTATCTGATCACTTTAATGtagatattaataaaaattcattctcacaCGAAGTTTTAAATAATCCGTCTACCATTCAGTATAGTGAGAATAGTTCATCACCCTCATCATCAAAAATACAGAGTCGCtcaaaatttattacacatacggatttgaataatttgatattgcaACCATGGCaatctatgaataattgtaatatgaaaaatcaatcatCTAACACTtcagttgaagaaaatatcaatcataatATTGATAGAGAAAATGAGCAGCACGACTGctcagaaaataataataaatttgaaactCGTGATAACAATGGCCAAACATTAATATTAACTGAAAACAGTACACCAGTTATTTGTACAATAACTGAAGAATCAATTCTTGAGAGTACTAAATCGATTGAgaatgacaaaatattatgTGATGAGCCTTTGAATAAgatcaattgcaataaatgTGATGAGACATTTGATAAACATGAAGATTTAACTTTGCATGAACAATGGCATTCTGGAAACGAAATTTCACAGCAAAAACGACGATGTGGACACTGTGCCCTCTCATTTACTAATCGTAAACAATTGCAATCGCATATTTTAGAAAATCACATTGGTCAACGACTTCTATTTCAATGTGGTTCATGCGACAGAGTTTATGAAAAATGGTCGAGCTTAGATGTTCATGAAGCAACCCATCGAAAAGATAAGCCATACTTATGTGACTTGTGTGGAAAGAGTTTTAAACATTCTAATAATTTACGCGGTCACAAAAGGATACACTTAGACATCACAAAAAAGAAACGACACGTCTGCGAAACTTGCGGTAACGCATTCAGATCAAGATTCCATTTACGTGAACACATGAATCAACATAATGGCAGTAAACcgtatatatgtgaacaatGTGGAAAAGCATTTTCGAAACGAATACAATTGCGACAGCATCGACTATCTCAcggattaaataaatatgcatgtCCAATTTGTGGTGTCACATTCAATCGTAGAGGAAATATGAATACTCATTTGAAGAGACACAGTAACAATGATGGAATGTACACATGTAGTGTATGCGCTTGCCGATGTAAATCAATGAGTGAATTGAAGATGCATCGCAAGAGTCATTCGGAGAATGATATAATCGAGAGTATCAAAAAGAGATGTAGTGACAAAACAATTTGGGAATGTAAAATGTGTTCTCGAATTTTTCCAAAACGCGGGGCTTTGCTGAGCCATGAGCGTACACATGATAGTGATCAAATGAGTGTTGAATGTGAGAAATGTGGCAAAAAATTagcgaataaaaattcattgagatACCATACAAAGTCGATACATACAACGGAGCGACCGTATGCATGCCAGAATTGCAATGAATGTTTCATTACAAAAGAAGCACGATTGATACATGAAAGAATACATACTGGTGAGCGTCCgtatatttgtaaattgtgTAATTTACAATACAGATGTTCGAGTCATCTCAGTCAACATATGAAAGTTCATTCGAAATTACGGCCATACGCATGCCAATATTGCAATAAAGCATTTACACGCAGAGGTGCAATGACTGTCCATGAACGAATTCATACAGGTATCAAACCATTTGCTTGTAATATATGTGATAAGAAATTTTcccaaaaaaatgatatgatgaAACATACAAAAACACATGATGCTAAGTTGACCTTGCGTTGCGAAGAGtgcaatgaaacattttcaaccaaaattgaaatttctgaaCATTTCGAGAATGTGCATCAGCCAAACACTAGTAATTTTCTCGCCATTAATAGCATGTGA
- Protein Sequence
- MKIVCAAPSCKYSAENEDSSDIIFISFPDDDTSTVWAHNCGRPDLIIKSNRELHLNYYVCSNHIEDHYYLSKTNDIMIAQGAIPTLFRSNSESPEHFTSLEEQYSSSDHVIDSLQLNDCIDTVNSNCPPSFVDNASSSDYPTTIYNAELHNSNNENDDRDNQDERQVNDDNNLNFCNINMNIDHFDGMTIRFTNLCRICGQSAPDGIDIVGDRAIELKLKDKIHLHLPIIVEIHDDDILPQKMCSDCHEKLEVFHSLVITCLQTDIRLRKYLNLPSKYNNEERFQEIISANELETNNEMCTGNSSDEQTPFIANKSKDLPPVSDHFNVDINKNSFSHEVLNNPSTIQYSENSSSPSSSKIQSRSKFITHTDLNNLILQPWQSMNNCNMKNQSSNTSVEENINHNIDRENEQHDCSENNNKFETRDNNGQTLILTENSTPVICTITEESILESTKSIENDKILCDEPLNKINCNKCDETFDKHEDLTLHEQWHSGNEISQQKRRCGHCALSFTNRKQLQSHILENHIGQRLLFQCGSCDRVYEKWSSLDVHEATHRKDKPYLCDLCGKSFKHSNNLRGHKRIHLDITKKKRHVCETCGNAFRSRFHLREHMNQHNGSKPYICEQCGKAFSKRIQLRQHRLSHGLNKYACPICGVTFNRRGNMNTHLKRHSNNDGMYTCSVCACRCKSMSELKMHRKSHSENDIIESIKKRCSDKTIWECKMCSRIFPKRGALLSHERTHDSDQMSVECEKCGKKLANKNSLRYHTKSIHTTERPYACQNCNECFITKEARLIHERIHTGERPYICKLCNLQYRCSSHLSQHMKVHSKLRPYACQYCNKAFTRRGAMTVHERIHTGIKPFACNICDKKFSQKNDMMKHTKTHDAKLTLRCEECNETFSTKIEISEHFENVHQPNTSNFLAINSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01560489;
- 90% Identity
- iTF_00996529;
- 80% Identity
- -