Mcol004467.1
Basic Information
- Insect
- Meteorus colon
- Gene Symbol
- -
- Assembly
- GCA_030523125.1
- Location
- JAPYZG010000479.1:44778-48836[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.024 2.2 8.9 2.6 1 23 365 387 365 387 0.97 2 19 0.041 3.8 8.1 0.5 2 23 424 445 423 445 0.94 3 19 0.00012 0.011 16.1 1.0 1 23 513 535 513 535 0.93 4 19 0.0016 0.15 12.6 0.5 2 23 539 560 538 560 0.97 5 19 0.0017 0.16 12.4 2.8 1 23 610 632 610 632 0.97 6 19 1.4e-06 0.00013 22.2 1.4 1 23 637 659 637 659 0.96 7 19 0.0007 0.065 13.7 0.4 1 21 665 685 665 689 0.91 8 19 0.00088 0.082 13.4 0.6 2 23 767 788 766 788 0.95 9 19 0.00017 0.016 15.6 4.8 1 23 843 865 843 865 0.97 10 19 0.00023 0.022 15.2 0.7 1 20 870 889 870 891 0.94 11 19 0.04 3.7 8.2 0.6 2 23 902 923 902 923 0.97 12 19 2.4e-05 0.0022 18.3 0.6 2 23 962 983 961 983 0.97 13 19 2.2e-05 0.002 18.4 1.6 1 23 988 1010 988 1010 0.95 14 19 0.00029 0.027 14.9 2.1 1 23 1016 1038 1016 1038 0.98 15 19 6.6e-06 0.00061 20.1 0.4 1 23 1055 1077 1055 1077 0.95 16 19 1.2e-06 0.00011 22.4 0.3 1 23 1083 1105 1083 1105 0.99 17 19 9.8e-05 0.0091 16.4 0.2 1 23 1111 1133 1111 1133 0.98 18 19 0.00013 0.012 16.0 4.1 1 23 1139 1161 1139 1161 0.96 19 19 0.0088 0.82 10.2 0.4 1 20 1167 1186 1167 1188 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGATATTGATACGGCTGAGTCGCCACAAAATGAGGATGATCCCGTAGAATCAACAGTGGACATTTGCCGTGTTTGTCTCATTGGCAATCTGATTATGAGGGATCTTTTTGTTCACGGTGATGTTGTATCACTTTCTGCCAAGGCCATGAGCTTTGCAAGCGTGAAGATGCTACCAGGTGATGGTTTACCACCACAGGTATGCTGTGAATGTGCAGATAAATTGGAGTCGgcatatgaattcaaattacaaGTGGAACAAGCTGACAGTGTATTGCGAGAACGATATGACAGTCTCAATATAAAAGAGGAACTTTTTTTCAACGAGGTCGAGGTTCATTTGGAGGGTGATAGAACAGATGATGTTTCAGAGATTGATGTTGATGCGCAATATGACGCTGCGGCGGAGACTCTCAATCGGGATGTTGTTAATGGTGGtaaatcattgataaaagACCATTTGGCTCTGTTGCAAGTTGAGAAATTAGCTGTACAGGAACAACACGATTTAAATCATGACACAATTGTACAGGAAGCGGATGATATCCAAGAAGTGATTATGAAAGAACATATGTTACAGTCAGAAGAACAATATATACACGACAGTACGCAAAATGATGGCCAGTTGATAAGTGAAGAAATGGAGTCGGGTGAATGTGACAATAGTATGAAAGCTGAAGGGCTGCAAGAGCAAGAAGGTATCATGATTGAAGAGCACAATTATATGATCCAACAAGATTATACATTGTCTACTGAGCAAGaacaagaattattgaatgacgAGAACGATCCACATGATCATGATACGGCAGAATATTTGTCAATGATTGGTGAAGAggaaacagaaatgaaagaacatGCAAATAATTTGTCGCTCGTGAAATCTAACGAATGTATTCCTCAAGTGTGCGAACAAGAGCAGGAGAATGAAGAATTGCAGCAAACACGTAAAAGTCGTCGTAAATCTGCACGTCGTATGGCATTAGCGAATGCAAAAATACCCGAAGAAGACAATTACTTTGAAAATCTGAATTTAAGCAGTCGCTTAACGCAATATCAAGTTGATAAATTGGGTAAAGTATTCTTCATGTGTTACTTGTGTGATAAACAATTTCTATCAAAAGATGTATTGAAAGAGCATATGCATTCACACGAAGAGGTGAGGCGGACGCTATGTCAAAAGAAATCGCCAGAAAAAACtccacaaaaaaatacatcaccATTGCCAAAAGGACAACCACCATCTGGAAAGAAAGCAAATAAATGTCCGTATTGTGGGAAAGAATATCTAtatgttatttcattcaacaaacaTGTGAAACAGCATCAAAAGAATGAAGACAAAGTTAAAGGAGATTTTGAAGATTCGCATCATAATGACTCAATGGAATATGTAGATTTTGATAACACTGATACGTATGAAGTCATTCCTGGTGGAATCGATGGAAATGGTGAggaatatatcaatgaaaatgataatttcattgaagatGAAACTTCATTGAAGAAACGGAATCGTATGGAATTTTATGCTTGTGATAGATGTTCGGAACAATTTTCCACAAAATCCGATCTCAAAAGACATTCAGCCCAACATACATTGCAGAAATGTAATATATGCGAAGAAGAATTCGATTCTGTAGACAAGTTACGTGAGCATCGCACAACACATGTGATCGAGGGGGTCATAACTGAGCAGGACCTGAAAGATGAACTTGTCAGTATGTGTATTAAAGATTACGATGAAGGGGATGAACAACTCGAACGTATTGAAGACGGAATGAGCCATTTGGAATATTCAAGTAAAGAATCGAGGGAACACAAATGTCCACATTGTCCTCTAATACTCAATACGAGGAAATCTCTCTCTAAACATTTGGAATCACACGAGGGTGTACGATATCGATGTACGATTTGCGGTGAAGATTTTTCACGCAATGATCATTTACGCAAGCATGCGGAGCAACACGCGCGGATCAAAACATTCATGTGTACTGAATGCAATAAGACTTTTGGCAATGAATTGACACTGAGAAATCATTTGATAGCAACTAATCATAAGACAATTTTGCATGGGGAGGAGTATGATccgaataaaagaataaaacgtGTGGCTGCTAAAGCAGCCCaacgaataattgataaaataagcACCGAAGATGGCTTAGACGATTCAGAAAAAGAtgacgataatgatgaatttatatctaaAGCTGATCTGACTGGTAGTggtatgaaaaatgaacgatTGCAAACATCATCgcgaaaatttaataataaaaaagatctTGAGTGCGCTACATGCGGTAAAAGATGTGTTTCCAAATTGGCATTGGCCAAACACATGGAGTATCATGTGAAAGATGAAAAGTCTGAACAGGTAGAgaagacgagaaaaaatattgagatgaaaGATAAATCGAGGAATTGTAATATGAGCTTCGGCGATGACagagatgatgatgacgacgatgacgatgatgatttTGATGGTGGGTTAGATTGGCCAATGGATACTCATGAATGTTCAACCTGTAAAAAACGATACAGCACAAAGAAATCATTATTACGACATCAGTTACTTCATGAAGAACCAAATTTCGAATGCGATATTTGCAATGTTAAATTCTATCGGAAGGATAAATTGAAAGCACATTATGATAAGTGCTCAGAAAAAAATCCTAATCAAGTTAGGAAGTGTAATATATGTGGTGATACATTTGAGAACAATGAGATACTTCGTGAACATAGATCGAAGCACGTTGACGAGGGAATTTTAACAGAAGAAGATTTGCGAGAGTTGGAACCTGGATCTGAAGAGAGAAAACGTGGTGAGAAAATAGCGCGTAAAAGACGAACTGATATTGTCGGATTGGAATGTACCGAATGTAATAAGCAATACACATCCCGAAAGGGTCTACTGAGACATATACAAGTACACGAAGGTAAAAAATATCTCTGCGATATTTGTCCAAAGAAATTTTACCGTCGTGAACACTTGAAGATTCATGTGGCAAAACATAATATGGTTAAACCATATAAATGTACACGTTGTTCTAAACGATTCATCAAAGAAGAGCAATTAGCGACGCATCTAACCAAGCATGAGAGAACTTTtaagaagaataaagaaacagACAGTAGTGCGAAGAGATTCCTTTGTGAAATATGTTCGAAGAGTTTCACACAATCCACAACCTTGGTTGCTCATTTGCGTGCGCATAATGGAATCAAACCGTATGTATGTGAAGTTTGTGCAAGACCTTTCACAACAAACGCTTATTTGAAGATGCACATGCGAACACACACACAAGAGAGGCCTTACAGCTGTCAATATTGTGCCAGAGCTTTCGCTCGTGCTGACACACTTGCAAATCATTTGACATCGCATACAGGCGAAGCCAAATATCATTGCAAATATTGTCCGAAGAACTTCAGGCGTCTCAAATCATTGAAGGAACACGTTTTCATTCACACTGGACAGAGACCTTATGCGTGTCCAACATGTGATCGCAGATTCAACAATAATGGGAGTCGTTATGCACACAGCAAGAGATGCAAACAGAATATGCTGCAGAATCAAATGAGACAAAACCAAAATCAGACTCAAAACACCACGCAAACTACTATTGTTCAACAACCACAAAGTCCCATTCAACAGACAATTAGATTAGCTCAAGCAGTTGGACCTACTATGCAAGTCGTACAgtcgaaaaatattaaaaccaTTACAATAACGCGGCATCCAGATCAGGTTGGCACGCATCAAGTAATGCAACAGGAAATTCTAATGCCACTCATTCTACCACTCGTTACTCTTGCTGATGTAGATGAAGAAGTTATATTGCCAGAAGGcactaaaatatttacaacaacGTAA
- Protein Sequence
- MDAVDIDTAESPQNEDDPVESTVDICRVCLIGNLIMRDLFVHGDVVSLSAKAMSFASVKMLPGDGLPPQVCCECADKLESAYEFKLQVEQADSVLRERYDSLNIKEELFFNEVEVHLEGDRTDDVSEIDVDAQYDAAAETLNRDVVNGGKSLIKDHLALLQVEKLAVQEQHDLNHDTIVQEADDIQEVIMKEHMLQSEEQYIHDSTQNDGQLISEEMESGECDNSMKAEGLQEQEGIMIEEHNYMIQQDYTLSTEQEQELLNDENDPHDHDTAEYLSMIGEEETEMKEHANNLSLVKSNECIPQVCEQEQENEELQQTRKSRRKSARRMALANAKIPEEDNYFENLNLSSRLTQYQVDKLGKVFFMCYLCDKQFLSKDVLKEHMHSHEEVRRTLCQKKSPEKTPQKNTSPLPKGQPPSGKKANKCPYCGKEYLYVISFNKHVKQHQKNEDKVKGDFEDSHHNDSMEYVDFDNTDTYEVIPGGIDGNGEEYINENDNFIEDETSLKKRNRMEFYACDRCSEQFSTKSDLKRHSAQHTLQKCNICEEEFDSVDKLREHRTTHVIEGVITEQDLKDELVSMCIKDYDEGDEQLERIEDGMSHLEYSSKESREHKCPHCPLILNTRKSLSKHLESHEGVRYRCTICGEDFSRNDHLRKHAEQHARIKTFMCTECNKTFGNELTLRNHLIATNHKTILHGEEYDPNKRIKRVAAKAAQRIIDKISTEDGLDDSEKDDDNDEFISKADLTGSGMKNERLQTSSRKFNNKKDLECATCGKRCVSKLALAKHMEYHVKDEKSEQVEKTRKNIEMKDKSRNCNMSFGDDRDDDDDDDDDDFDGGLDWPMDTHECSTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPNQVRKCNICGDTFENNEILREHRSKHVDEGILTEEDLRELEPGSEERKRGEKIARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCSKRFIKEEQLATHLTKHERTFKKNKETDSSAKRFLCEICSKSFTQSTTLVAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCARAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNMLQNQMRQNQNQTQNTTQTTIVQQPQSPIQQTIRLAQAVGPTMQVVQSKNIKTITITRHPDQVGTHQVMQQEILMPLILPLVTLADVDEEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00996522;
- 90% Identity
- iTF_00996522; iTF_01560616;
- 80% Identity
- -