Mcol010023.1
Basic Information
- Insect
- Meteorus colon
- Gene Symbol
- -
- Assembly
- GCA_030523125.1
- Location
- JAPYZG010002756.1:2206-4383[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.8e-10 6e-07 29.0 0.1 5 38 19 52 18 54 0.95
Sequence Information
- Coding Sequence
- atggtgcgaaattataaaaaaaaatgtggacaTCAAAAATGGAATCAACTGTCCATGGCGAAAGCTATTACTGAAGTTGTAAACGGTAATTTAGGTGTCAAAGCTGCTGTTAAAGCTTACAACGTTCCACGGTCAACTCTAcaacgaagaataaaaatttacaaaattaattctaacTTAGAATCTAGTACCGAAAAACgTTTAGGAAGATATGAGACTGTCTTTAGTCCGAAACAAGAGGAAGATTTGGTGAAGTATTTGAAAGAGCAGGAAAAGCGGCTCGCTGGTTTAACCACCAAAGAACTACGTATACTGGCATATCAACTAGCTGAAAAGAATGGAATCGAACATCCTTTTCAACAGGGCATGGCTGGGCGTGACTGGTGTCGGGCTTTTCTCAAGCGTCATGcaaaagaattatcaatacgCAAGCCACAATCAACATCTAAATATCGAGCTATTGgttttaataaaattgcaactcaaaatttttatgatctATTAGAATcagtaattattaaatataaactaACACCTGACCGAATttataatgttgatgaaaccGGAGTTACAACTGTTCCTAAGCATCAGTCAAAGATTATAGCACCTAAAGGAAAGAAGCAAGTTGGTGTTTTAACTTCGGCAGAACGAGGACAGTTGGTTACGACAGAGATTTGCGTATCGGCTGCTGGAACTTATTTGCCTCTTATGTTTGTACTTCCTCGAAAGAAGTTACCCGCTCGATTATCTGAAATACTTATTGATGATTGCTGGGCCCAATGTCATTCTAGCGGTTGGATAACGAGTGAGCTATTTTTCAAGTGGTTTGTTTGGTTCGTTGAAATTGTCCAACCGACAGAAGAAAGACCTGTTTTATCAGTTTTAGATGGACACGCGACCCATACACAAAATTTGGATGTTATAAATTATGCCAGAAAACATCACGTAATTATAATATGCTTGCCTCCTCACTGCACGCATCGACTCCAACCTCTAGATGTGAGTGTTATGCGTCCAGCTTCGATAGCATATTCTGATGCAGTTAAACAATGGTTGAGAGAGCACCCCGGTCGTGTCGTGACAACCAATGATATACCTCGAATTTATGGTGAAGCTTTTAAATCTGCTGCGAAACCTGAAACCATCAAAAATGGCTTCAAAAAAACCGGAATCTGGCCTTTCAACAGATCAGTTTATTCTGACGAAGCTTTTGTCGCTGCTGGTACTTCAACCCCCCAGATTCCATCAAGTAATGCTTCTACTGCTACTAGTACTACTGCAACTaatactgatgatgatgacgatgatgataacGATGGTGATAAAGCCAATGTTAGTAGCAGCAGTGATGAAGAAATGCAGGAGGTTACCAATAAAATGACCAATGATCATAATAACGAAGCTGCTGATGCTGATGACGATGATGCTTATgattgtgataataatgacgatgatgatggaCCCGAATTGCAGTGTCTTAGTCAGAGAATAAGTTCAATTTCGGTGATGGCGGATCAAATAGAAACCGGTGATTTTCAAACTCAGTCACGCGGTGaagatattgaagaagaaaaagaaaacgaagaaattgTTGCTCATTCTTCAAGGATGACTGCTAACGAATACAAGTGCCAATTTCTTCGTGAAGCTTATGGAGACCAGAGTTTCTCAGATACTGACGAGGAACCAGAAAAGAAGCGAAAATTAGacgaattcaatatttccccGCAAACTATCCTCCCTTTTATGGAAAATCAAACTAGTATCAGCAATTCAAGGCGTAAAAGTACTGCGATCATCACAAGCTCACCGTACAAGCAAAAACTTTTAGACAAGAAGCAGCAATCGAAAAACGTACCTACGAGGAACAAAACACTGGGTAGTACAATTAAAGGAAAGGGGAAAGGGAAAGGAAAATCAAAGCAGTCTGTTGATGATACTGCTTGCATTTtctgtgaaaaattatattccgAGTCTGTCGAATCATGGATTCAATGCGGTCAGTGTAAAAATTGGGCCCATGATTCTTGTGCTggagtaaaaaataaagtcgTTCGAAGCTACACGTGcgatatatgtaaataa
- Protein Sequence
- MVRNYKKKCGHQKWNQLSMAKAITEVVNGNLGVKAAVKAYNVPRSTLQRRIKIYKINSNLESSTEKRLGRYETVFSPKQEEDLVKYLKEQEKRLAGLTTKELRILAYQLAEKNGIEHPFQQGMAGRDWCRAFLKRHAKELSIRKPQSTSKYRAIGFNKIATQNFYDLLESVIIKYKLTPDRIYNVDETGVTTVPKHQSKIIAPKGKKQVGVLTSAERGQLVTTEICVSAAGTYLPLMFVLPRKKLPARLSEILIDDCWAQCHSSGWITSELFFKWFVWFVEIVQPTEERPVLSVLDGHATHTQNLDVINYARKHHVIIICLPPHCTHRLQPLDVSVMRPASIAYSDAVKQWLREHPGRVVTTNDIPRIYGEAFKSAAKPETIKNGFKKTGIWPFNRSVYSDEAFVAAGTSTPQIPSSNASTATSTTATNTDDDDDDDNDGDKANVSSSSDEEMQEVTNKMTNDHNNEAADADDDDAYDCDNNDDDDGPELQCLSQRISSISVMADQIETGDFQTQSRGEDIEEEKENEEIVAHSSRMTANEYKCQFLREAYGDQSFSDTDEEPEKKRKLDEFNISPQTILPFMENQTSISNSRRKSTAIITSSPYKQKLLDKKQQSKNVPTRNKTLGSTIKGKGKGKGKSKQSVDDTACIFCEKLYSESVESWIQCGQCKNWAHDSCAGVKNKVVRSYTCDICK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01005976;
- 90% Identity
- iTF_01005976;
- 80% Identity
- -