Mcol011609.1
Basic Information
- Insect
- Meteorus colon
- Gene Symbol
- bab1
- Assembly
- GCA_030523125.1
- Location
- JAPYZG010004368.1:479-4279[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.6e-08 4e-05 23.2 0.0 2 38 208 244 207 250 0.88 2 4 2.4e-12 2.1e-09 36.9 0.0 2 39 258 294 257 301 0.85 3 4 0.12 1e+02 2.7 0.0 8 33 316 340 314 345 0.72 4 4 1.7e-13 1.5e-10 40.6 0.1 5 39 373 407 372 411 0.93
Sequence Information
- Coding Sequence
- ATGTCTGAGGATTCAAGTCAACCTCAAATTCCTCAAATTGATGAGAGTTATTGTTTCAAATGGAGCGATTATCAAAATCATTTGTCGAGTGTGGTGCAACAATTGCGAGAAGAAGATTGCATGGTGGATGTAACACTCTGCGTTGGTGGCGAACGTATACATGCTCACCGCATAGTTCTATGCGCATGTAGTACATTATTTCAAGAAATACTGAGTGAATCCAAAGATGATCATCCCACTATCATAATAAGCGATATATCGCCAGCAGATTTGCgatcaattgttgaattttcttATCATGGAGAAGTGAGAATTCCTGTAGATAATATCAGTGATCTTCTAGATGCTGCTCATTCGTTGAAGATATGCGGACTGATGGagATTGAAGGTTTGGATGAAGGTGATTCACAGACGAGCACTAAAGATTCCGTGGATGATAGTACAAATCTTTTCGATGAAATAACTGAGGAAGATGAAGTGATTGCGGAAGAGCATAAAGATTATACTTTGATACAAGATGAAGACTCTGAAGGTGACGTTGAATTAAATGTACAGAACGtcaaagtaaataataaaaggaagaagaagCGTAAACGTGAAACAACAAAGagagaatataataatgacaTGTTGGAGGCAGCAATAAATGATGTTCGCGGTGGACAGTCCCTTGTAGACGCAGCGACCAAGAATAATGTCCCCCGTTCAACGCTTTATATGCGTGCTAAGGCCTTAGGTATACAACTGAATGCCGCACGGAATGAATATCCTCCGGAGTGCATCAAAGCAGCCATCAATGCTGTGATCAATGGTGCAAGCTTCCAACAAGCATCTGACATGTTCAGCATTCCAAAAACAGTATTATGGCGACGGATACAAAAGGAAGGTTATCACATCTTGAGATCCGAAATGAAAAGATCTTACGATGCTGGAAAGAGAGAAGCAGCCGTCAAAGCTTTAGCGAGGGGAGAAAATCTGACCAAAGTGGCTTTAGAATTCAAGATACCTAAGACAACGTTATTCAgagacaaaacaaaattagtaGACCAGGGAAAATTGCCTGAATCTTTTTGGCGGAAACGCAAGactgaagatgaagaaatgaagaaactTCGTTTAGAGGAAGCCGTCGCAGCATGTATAGAAGGCAAAATGTCTCAAGCAGCCGCAGCGGTGGCTTTCCATATACCGAAAACAACGATATGGCGTCGGCTCCAGAAAGAAAATCGCAAAGTTGATCGCGGTAACATCAGTAAAAGgcaaacaaaggaaaaaaaacaagcgCCTGTCAGTACCAAAACGAAATGTGAAACGAATAcggaattttcattgtgtgagGTTTCATCGGACATACCGATAACttacattgatgaaaataatttaccagACGACTCTGTCATAATTTTGACTACAAGCGATGTTGATGGACTTGGGATGGATGAAAATCGTGAAATGATAGTCAGTACGGACTCTGGCCATGGATATGTTTCATGTTCGCTGAATATGGAAGAGAATGCAAGTTATACATCAGCAGAGAGTTAA
- Protein Sequence
- MSEDSSQPQIPQIDESYCFKWSDYQNHLSSVVQQLREEDCMVDVTLCVGGERIHAHRIVLCACSTLFQEILSESKDDHPTIIISDISPADLRSIVEFSYHGEVRIPVDNISDLLDAAHSLKICGLMEIEGLDEGDSQTSTKDSVDDSTNLFDEITEEDEVIAEEHKDYTLIQDEDSEGDVELNVQNVKVNNKRKKKRKRETTKREYNNDMLEAAINDVRGGQSLVDAATKNNVPRSTLYMRAKALGIQLNAARNEYPPECIKAAINAVINGASFQQASDMFSIPKTVLWRRIQKEGYHILRSEMKRSYDAGKREAAVKALARGENLTKVALEFKIPKTTLFRDKTKLVDQGKLPESFWRKRKTEDEEMKKLRLEEAVAACIEGKMSQAAAAVAFHIPKTTIWRRLQKENRKVDRGNISKRQTKEKKQAPVSTKTKCETNTEFSLCEVSSDIPITYIDENNLPDDSVIILTTSDVDGLGMDENREMIVSTDSGHGYVSCSLNMEENASYTSAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01001509;
- 90% Identity
- iTF_00996466;
- 80% Identity
- iTF_00997149;