Basic Information

Gene Symbol
nfxl1
Assembly
GCA_030523045.1
Location
JAPYZF010000150.1:93106-95204[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.86 7.3e+03 -2.9 1.1 15 19 124 128 123 128 0.81
2 20 0.12 9.9e+02 -0.2 0.8 4 10 159 165 158 165 0.95
3 20 2.6e-06 0.022 14.7 20.0 1 19 173 190 173 190 0.98
4 20 1.1e-07 0.00093 19.1 17.8 3 18 228 243 216 244 0.83
5 20 0.27 2.3e+03 -1.3 1.0 8 14 249 255 248 255 0.77
6 20 0.69 5.9e+03 -2.6 0.9 5 10 268 273 268 280 0.79
7 20 0.058 4.9e+02 0.8 10.6 3 19 281 298 273 306 0.83
8 20 0.021 1.8e+02 2.2 10.8 1 18 334 351 323 352 0.86
9 20 0.28 2.4e+03 -1.4 7.4 1 12 386 397 386 397 0.89
10 20 1.5 1.3e+04 -3.7 1.6 6 10 407 411 407 411 0.95
11 20 2.1e-07 0.0018 18.2 15.8 1 19 417 435 417 435 0.93
12 20 0.88 7.5e+03 -3.0 0.7 6 10 463 467 462 467 0.91
13 20 7.3e-05 0.62 10.1 9.7 9 19 482 492 480 492 0.90
14 20 0.0025 21 5.2 6.7 3 12 503 512 502 512 0.90
15 20 0.69 5.9e+03 -2.6 5.8 14 18 544 548 544 549 0.89
16 20 1.3 1.1e+04 -3.5 0.6 9 12 566 569 566 569 0.77
17 20 0.15 1.3e+03 -0.5 0.5 6 10 575 579 574 580 0.85
18 20 0.00091 7.7 6.6 5.0 1 12 585 596 585 596 0.95
19 20 1.9 1.6e+04 -4.0 0.8 6 10 609 613 608 613 0.69
20 20 4e-05 0.34 10.9 15.8 1 19 621 638 621 638 0.94

Sequence Information

Coding Sequence
ATGCGTAAGTTCAAACGCGCCCAGGCACAAAATCAAGCGTCAATTGAACGGcatttggataaaaaattggattcaTCAAGTGATGAAGACAATGAGTCGACCAACGAGGAGTTACAACGCGCTCTGAATGGAACATTATCATCATACCAATATGAAGGTGGTGATCCAGAGCGAGCATTATCTTACTtatctgatatttttcaatctggCGGTGCAATTTGTTTGATATGCATTTCGTCAGTAAAAAAAACAGATTCAATATGGAGTTGCGCTACTTGCTATTCATTTATGCATTTATCATGTATTCAACACTGGATACGCGATAGTTTAATttacaaacatgaaaaaggaataaaaccACTGTGGGCATGTCCAAAATGTCGCACAGAATATCCAGACAATGATATACCAAAAGAATACAAATGTTTCTGTGGTAATTTAACGGATCCAGTTTATCAACCATGGAATATACCACACTCTTGTGGTGAAACATGTGGCAAACCATTGCAACCATCATGCGGCCACCATTGCGTATTACTTTGTCACCCGGGACCATGTCCACCGTGTCCAAAAATGGTAACAGTTAAATgttactgtgaaaaaaaaccaGCGCAAGTAAGACGTTGTAACACAAAACAATGGAGTTGTGGAAGTATTTGCGGGAAAAGTTTACCAAGTTGCCAACACACTTGTCAATCCGAATGTCATTCAGGACCATGTCCACCATGTTTAACTGTTTTATCAGCGCCATGTCACTGTGGCAATGAAGAATCATTGAAACAATGCAACGAATCAATTTGGAAATGCAcgaaaaaatgtggaaaaagtTATCCATGCAAAGTGCACGTCTGCGAAGAATTTTGTCACCGTACTAATGACTGCGGTGATTGTCCACTAGCTGGAAACCGCACGTGTCCATGTGGCAAAAAGAAGTACAATGTTTCATGTAAACAGCAAACAGTACCAACATGTGGTGATAcctgtggaaaaatattagatTGTCAATCGCATTATTGCAACATGCGATGTCATACGGAACGTTGTGGACAATGTCTTGAAGTAGTAACAAAAACATGCCGTTGTGGCAGCTATACAAAAGAGATAGCATGTGCCAAAGATTTccattgcaataaaaaatgtacgCAAATGCGTTTATGCAATCGTCATCCGTGTAACAAAAAATGTTGcgattgtttattattaaataaatttaacgtATGTGAAAAGACATGTGACATAACGTTAAATTGTCGTAAACATAAATGTCCAGCGCCATGTCACAGTGGACCATGCTATCCGTGTCCACGTACAGTTGTTATTCAATGTCGTTGTGGTAACAGTAAAATAACAGTACCATGTGGCACAAAACGTATTAAACCACCgcattgtaaaaaattatgtaaaatacCACCAGTTTGTCATCATCCAAAGCGTGAATCGCACAAATGCCATCAAGGACCATGTCCACCGTGTcgtaaaatttgtaatttaacatataaaaaatgtgaacacACCTGTCCAGCAGtttgtcatgaaaaaatatggattaAAGTGCAGATTAATGGAATTGCTACTAAACCAATGGGTCCTTGGGAGACACCAAAAGAAGTGATGCAACAAAAAACACTTCCATGTCCACCATGTGAAGTTCCAGTCATGGTAACGTGTCTTGGTGGTCATGAAACATTACCATGGCCATGTCACAAAGCCATTTCAACATCGTGTCAACGTCCATGTGGTCAATTGCTCAAATGTACTAATCATGATTGCGAATTAATTTGTCATAAACTTGGTGgaagtaatgaaaaatcacGATGTATGGATTGTGAATTGCCGTGTGCTTTACCACGACCTCAAGGATGTTCACATGCATGTCCAAATGTTTGTCATCCATCGCCATGTCCACCTTGTAAACAAATTGTACGGATTTCATGCCATTGTGGTATTAACAGTCTTTACAAACGCTGTTCGGAATTAACTAATGCGACAATTGAACAGCgtgatgaattgttgaaGTGTATGTCGTGGTCCTGA
Protein Sequence
MRKFKRAQAQNQASIERHLDKKLDSSSDEDNESTNEELQRALNGTLSSYQYEGGDPERALSYLSDIFQSGGAICLICISSVKKTDSIWSCATCYSFMHLSCIQHWIRDSLIYKHEKGIKPLWACPKCRTEYPDNDIPKEYKCFCGNLTDPVYQPWNIPHSCGETCGKPLQPSCGHHCVLLCHPGPCPPCPKMVTVKCYCEKKPAQVRRCNTKQWSCGSICGKSLPSCQHTCQSECHSGPCPPCLTVLSAPCHCGNEESLKQCNESIWKCTKKCGKSYPCKVHVCEEFCHRTNDCGDCPLAGNRTCPCGKKKYNVSCKQQTVPTCGDTCGKILDCQSHYCNMRCHTERCGQCLEVVTKTCRCGSYTKEIACAKDFHCNKKCTQMRLCNRHPCNKKCCDCLLLNKFNVCEKTCDITLNCRKHKCPAPCHSGPCYPCPRTVVIQCRCGNSKITVPCGTKRIKPPHCKKLCKIPPVCHHPKRESHKCHQGPCPPCRKICNLTYKKCEHTCPAVCHEKIWIKVQINGIATKPMGPWETPKEVMQQKTLPCPPCEVPVMVTCLGGHETLPWPCHKAISTSCQRPCGQLLKCTNHDCELICHKLGGSNEKSRCMDCELPCALPRPQGCSHACPNVCHPSPCPPCKQIVRISCHCGINSLYKRCSELTNATIEQRDELLKCMSWS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00997401;
90% Identity
iTF_00997401;
80% Identity
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