Mcin002109.1
Basic Information
- Insect
- Meteorus cinctellus
- Gene Symbol
- -
- Assembly
- GCA_030523045.1
- Location
- JAPYZF010000038.1:18906-23048[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00081 0.07 13.5 0.4 3 23 228 248 226 248 0.96 2 11 0.5 43 4.8 3.5 2 21 355 374 354 375 0.94 3 11 0.13 11 6.6 0.5 3 23 393 413 391 413 0.94 4 11 0.12 10 6.7 0.3 1 20 487 506 487 508 0.94 5 11 0.053 4.6 7.8 0.1 2 23 563 584 562 584 0.94 6 11 3.5 3e+02 2.1 0.2 1 23 605 627 605 627 0.94 7 11 0.00045 0.039 14.3 0.2 1 20 632 651 632 653 0.95 8 11 0.038 3.3 8.3 1.1 1 23 671 694 671 694 0.91 9 11 1.3 1.1e+02 3.5 0.0 1 23 1078 1100 1078 1100 0.93 10 11 1.8 1.5e+02 3.0 1.1 1 23 1198 1220 1198 1220 0.91 11 11 0.0077 0.67 10.5 4.9 1 23 1352 1374 1352 1374 0.98
Sequence Information
- Coding Sequence
- atggaTTCTGACCGGAATATTTTGGAACTTTGCAAACCGCTTTTTGTAAAATTAACTAGAATATCAAATTCTGAAATCAATAGATGGAAACAAGGAATAAAGCATACAGATCGATTGTATTCACGTCGTAGATCACTGAGTGTATCGCAACAGGGAAGTTGTAAACAGTTCAagtcgaaaaaaattcaaaaacgaCCACCGAAATACATATTGAGTGATAGTGATGGTAGGCTGTGTCAATCTGAAATGTCTAGTACTAAGGATGGCATTATGATTTCGAATGAGTATGGAGAAGCTGATAAGGCCAATAGTGCATTTCACGAAATTGGATCTGAATCAATTAATAGCATTATATTACCAAAGAATAATGTACCAACGAATGATAAATCAGTATggaaatataagagaaaacgTAGGAAGATATCAAAATCGATTGAAAGAACATTacaaatatgtgaaaataacGATGAGTCAAACAATATTCAGGTGTCAAGTAACTCCAAGTGTTCCCATGATGATCATGAGAGTACTCATGTCAACTTGAGCAAAGAAATCAAAATAGTATCATCTCGATTGGAAGATTCCGATGATCCACAGGTTGAAAGATGGCggtcgaagaaaaaaacatcgtTGTCACTCAAATCGAAACAGCGATTACCACCAAAATTAAATAGCCTCGATTGCACCGTATGTTCTGTTACATTCGACAATAAAGAAGACCTTTCGAATCACATTTTCAAACATACACAACGTGAGTTACAAGAGGCATATAAAGTggcaaaaacaaaattacgtGAAGGTGAAAGCAACAGTGATATTGGAAATaacagtgatgatgatgatgtagaTGTTTCTGGTAAAAGTGTAGATCTCAATGGGATGGATCAACCTCGTGACATGGAGTCACCTTCAGACAAAAGTTCACCTCAAATAACACCATCGGCATCGTTATCTACAAATACTTTGGGAAAAGAAACATCGTCAGGACCAATGATCGTATGTTCATGCCACACTGATCATTATCCGCAAAATGAAGCAAGCGTTCAAATAGAAATGGTCCTTTATTGTGAGACATGTCATGTACTTTTTCGACGGAGCGAGTGCTTTGAGACTCACTATCGTTTTAGTCCAATATGCAATGAAGATCGGACAAAAGGCAGAACgccaaaattattttgcagTACCTGCCGAGTAATCCTCAATACACTATCAAATATGCGACGACATTTAGAGGAACATGCgagtataaattttcatcgtaCTGTTACTTTCGTTTGCAATATTTGTCGTGTTGTGTTTCTTGGTGTCGGTACGGTATTTTGTACTCACTGGTTCAATCATGAAAAGGATCCTACATTTGTGGCGAGTCGTTATTCATTCCCAAAATTGTGCGTATCAACTCAGGGTATAAAACCATCAGGTAGTGCACCAGACGAACAATATCTTTTCGTTGCGGAATATGTTTGTCGTTCATGTaagtttcaattttcttctgaaTTTGAACTCGCGCAGCATGTCGCGAAAGATTGTAAAGGCCCAGTAATCGAAAAAGAGCACGTACAGAGCAAAACGACGTGTTTGAATACTGCCAAGAAACGTTCAAGGCCATCAAAATTAAGTTCTCAAACAGATGTCTCGAGGAGTGCTCCATTATCGTTCAAACCATTGGATATGATTAATAAGTGGatttgtgaattttgtgaAGAATCTTATCCAAGCCGTGATGCATTCGAGGAGCATAGCTCGAAACACTTACAAGATGATGGATATCCCGGGTATAGTTGCGTATTTCAGTCGAATGCATCAACGGCATTTATATGTAATGTTTGTCGAAGTGTACAGAAACGTCTTCAAGATTTGATGGAGCACTGGGTTACGCACGAagtcattaaatttatttgcactgtatgtgatgaaaaatgttcatcataTAGCACACTTGAAGCCCACATGGCTTTAGCCTGTTGGAAGTCCAAACCAGATTGCCGGGTGTGGTTTAGCCGTGAACAATATCCATGTAAAATTTGTAAATCTTTGTACAAAACTTCAGAAGAATTGGCGCACCATTATGCATTCGAGCACGTTAAGGAAACAAATTCTATTCCCATTTTTCCGCGCAGCCCATCGCGTTCTGCTGTAGAAACAGTTCCGGTATCTGGAACATCAACTAATCCAAGATTGGAGACAAATTGTTTGAAGCAACCGACGGTCATCAAATCATCTCATTCTACTAACAATCAAACCGAGCCTGTAAATTTTGCTTtccaaaattcaaatattacgGGTTTTTCCAAGACCCTTGCGCCTAATATCGAGAATTCAATCACTGAGGACAAGCCAATACAAGAGCTcagtacaataaaaataacaataccaaatttattggaaaaaccAACAGTTATATGCCAAGCTCAATCTATTATTGATCCGGTAACTTCTAGCAATAATATACGGGAGAAAAGGCCAGGAATCTGTGAACTGATGGGTGCGTCCGCTTCGAACAAAATAGCAAGCTTAGACAATAATGAGAGGAATGCACCTGGTTCTTCAATGATCCCTGAAATACCGGATGGCGAATCTCGGAATGAATGTGAAGCGACTGACAACATCCCTACGAAGAATTCACGTTTACGTGGGACAAGTGTAATATCGATAATCACCACCAATATGCCTACTGGTAATGGTGATGCTGAAATAAAGAACACAACTATTGGAGATGCACATTTTCTTCAGGCGATAACGATGGATTCGCCAAATTTTGGGTTACCAATTTCATCGAACTCATCGAATAATAGTTCAAGGATAAATGATGAATCAGAGTTGAATAATGTAGATGATgcattaacaattattatcagctccgaaaatgttgaaaatgcATGCATCATTGCTGATAAGGAATCGGAAATGAAGATATCCGACGAactggaaataattgaaatcacCAATAATTTAGCTGGAACAACAAATACTCATGCGGTACAAGGAACCTTACATGAAAAGAAGTCAAtgccattgaaaaattgtgaattggaaTGCCAAGTGGAGAACGAACGTAGTTCAGCCAAACGTCAGTTATTGTATGAGAAAGCATCCAATAACGAGAATAAGTGTGCAACTGCTATTGATTCCATTGAAAAAGTAGatgtatattcaaatgattccAGTGGATCAAAACCCCGAGGATTTTTAcgtgtgaaaaaattcaccgAACTTCAAGCCATTAGAAATTACATTTGTCATCTGTGTGCTGCGGCGTTCGATAATGTTATGTCATTAGATGAACATGTAATTGCTCATGAAAGGCGcccaattgaaaatgagaaacatCCAAGGATGATGGCTGCTTTAATATTACCACAAGTTGAACCTAGCACAGTACAGAGAGAATCTGTTGTGCAAACACCATTGTCGATGGCTCCTCAAATGGCTGGATCCAGAATATTACCCCAAATTCCACAACGAGTCCCGAATGCAAATGGAAGAAAAGCTTGTGCTCTGGCACGTGCACAAGTCAATAACAAATCGCACAATTCACCTACCATacataattcaacaaataccCACAACGCTATTCAAGAACAGTCATATTACAGGTGTCCATTTTGCTTGGGAACTTTTCGCTGTGAAGATTTTGCGAATCATTTAGCTGCAAATCACTCTAATATAAGGGTATCAGACACAAATACCAATGTGGGTAGCCCTATTATCCCTTATAAAGCTACGAATGCGATATCGGAAGAAAAACAGGAAATTTATGCGcgtaaaatttgtaaatataccACACATGATAGAGGCACAATTGATGAGCACGCTAGATTTCGTCACTTCAATGCAGCCCAACACCATACTAACATTGTTCCCACAAATAACTCTGAATCAGTCCAGCATATTGACCTCACCGTGTCTGCTAATGGCAGAATGAATCCAAATATCATACCTCCATTTAAATGTAGTTTATGTCCGAACAATCAGTATAATACGTTCAAAGAACTGTCACAACATTTTCAAGCCGTACATTATCCGATTATCGGAAAAGACATTTGCCATCCGTATTCCTGTCACATCTGTTTGCATTCATTTCGAACATTTAATGAGCTAAGCATTCATACAAATAGCCATCAAAATACTGGATGGACATGA
- Protein Sequence
- MDSDRNILELCKPLFVKLTRISNSEINRWKQGIKHTDRLYSRRRSLSVSQQGSCKQFKSKKIQKRPPKYILSDSDGRLCQSEMSSTKDGIMISNEYGEADKANSAFHEIGSESINSIILPKNNVPTNDKSVWKYKRKRRKISKSIERTLQICENNDESNNIQVSSNSKCSHDDHESTHVNLSKEIKIVSSRLEDSDDPQVERWRSKKKTSLSLKSKQRLPPKLNSLDCTVCSVTFDNKEDLSNHIFKHTQRELQEAYKVAKTKLREGESNSDIGNNSDDDDVDVSGKSVDLNGMDQPRDMESPSDKSSPQITPSASLSTNTLGKETSSGPMIVCSCHTDHYPQNEASVQIEMVLYCETCHVLFRRSECFETHYRFSPICNEDRTKGRTPKLFCSTCRVILNTLSNMRRHLEEHASINFHRTVTFVCNICRVVFLGVGTVFCTHWFNHEKDPTFVASRYSFPKLCVSTQGIKPSGSAPDEQYLFVAEYVCRSCKFQFSSEFELAQHVAKDCKGPVIEKEHVQSKTTCLNTAKKRSRPSKLSSQTDVSRSAPLSFKPLDMINKWICEFCEESYPSRDAFEEHSSKHLQDDGYPGYSCVFQSNASTAFICNVCRSVQKRLQDLMEHWVTHEVIKFICTVCDEKCSSYSTLEAHMALACWKSKPDCRVWFSREQYPCKICKSLYKTSEELAHHYAFEHVKETNSIPIFPRSPSRSAVETVPVSGTSTNPRLETNCLKQPTVIKSSHSTNNQTEPVNFAFQNSNITGFSKTLAPNIENSITEDKPIQELSTIKITIPNLLEKPTVICQAQSIIDPVTSSNNIREKRPGICELMGASASNKIASLDNNERNAPGSSMIPEIPDGESRNECEATDNIPTKNSRLRGTSVISIITTNMPTGNGDAEIKNTTIGDAHFLQAITMDSPNFGLPISSNSSNNSSRINDESELNNVDDALTIIISSENVENACIIADKESEMKISDELEIIEITNNLAGTTNTHAVQGTLHEKKSMPLKNCELECQVENERSSAKRQLLYEKASNNENKCATAIDSIEKVDVYSNDSSGSKPRGFLRVKKFTELQAIRNYICHLCAAAFDNVMSLDEHVIAHERRPIENEKHPRMMAALILPQVEPSTVQRESVVQTPLSMAPQMAGSRILPQIPQRVPNANGRKACALARAQVNNKSHNSPTIHNSTNTHNAIQEQSYYRCPFCLGTFRCEDFANHLAANHSNIRVSDTNTNVGSPIIPYKATNAISEEKQEIYARKICKYTTHDRGTIDEHARFRHFNAAQHHTNIVPTNNSESVQHIDLTVSANGRMNPNIIPPFKCSLCPNNQYNTFKELSQHFQAVHYPIIGKDICHPYSCHICLHSFRTFNELSIHTNSHQNTGWT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -