Mcin007831.1
Basic Information
- Insect
- Meteorus cinctellus
- Gene Symbol
- -
- Assembly
- GCA_030523045.1
- Location
- JAPYZF010000303.1:13524-24944[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00055 0.048 14.1 1.3 1 21 72 92 72 93 0.96 2 12 0.00017 0.015 15.7 1.4 1 23 101 123 101 123 0.98 3 12 0.00048 0.042 14.3 0.1 1 20 196 215 196 217 0.93 4 12 0.017 1.5 9.4 2.4 1 20 291 310 291 312 0.94 5 12 0.00038 0.033 14.6 1.3 1 20 320 339 320 339 0.98 6 12 5.1e-07 4.4e-05 23.6 2.5 1 21 365 385 365 386 0.96 7 12 1.7 1.5e+02 3.1 0.1 1 16 394 409 394 411 0.80 8 12 1.5e-05 0.0013 19.0 1.2 1 21 456 476 456 477 0.97 9 12 2.3e-06 0.00019 21.6 0.9 1 23 485 508 485 508 0.97 10 12 1 89 3.8 0.7 3 21 563 581 562 582 0.91 11 12 6.4e-07 5.5e-05 23.3 1.0 1 21 617 637 617 638 0.97 12 12 0.00041 0.035 14.5 6.3 1 23 646 669 646 669 0.97
Sequence Information
- Coding Sequence
- ATGGCTGTTACATGTTTCAGGTGTCCGGACGAGAAGACGTTATACCAAAATCCACAATCATCTAAAATTGCGACGAGCAATGGAGGCTGTGATGCAAGGAATCATGTCATTGAGAGAATTCAAGATGATGCGCTATGTCAACTGTCCAAAGATTTTAATCCAATGGACGGATGGGGAACGAGCCGTATGCGCAGAATGAGAGGTCAGGGATGGTACATGTGTGAAAATTGCGGTCGACGTTATcatgaagtgaaaaatctCAAGCGTCATCTACGCAACGAATGTGGGAAGAGACCGACTTATCAGTGCTCATATTGTCCTTATAAAGCAACTTATAAATCATATCTAGAGATACATTTGACTAAACACAGTCGGCATGATTTCACACCAAGAGTATCATGCACAAATCCATTTGGTCAAGGATCTGAATGCAATTACAGTTCGGCGAATTGGACTCTGCCAACCCTTCCTCCATCGACATCAAAAGACAATAATATATCGACACGTCGGACTCGATCTACCACCTTCGGCGATGATTATTTGTTCGGTAACAAAGGAAGAATGCGACGACTTGGGCCACGAAAATATCTGTGCACCGATTGTGGAAGTACGTTTGCTCTAAAAGCATCATTGACACGACATCAGTCGCTGGAATGCACTAGAGAAATGGCAATCGCAGCCAAACCAAAGGTCACAAAGcaatcaaaatcaataaaatcaatgaaaccATCGATACCAAAGTTGATGAAGACATCAACACCCAAATCAATACTATCCAAAAGTACATCCAGCccaaaatcaacaaaaattaaattagatCCAGATCAATTATCGCCATTGAAACTAAAATCTGAatctaaaaagaaaaaacatactTGTAAACGTTGCGGCCGCGACTATGCCTTCTACACATCATTATGGCGTCATCTCCATTACGAATGTGGAATGGAACCAAAATTTACATGTGAAATATGTTGTTTGCGTTTCGCGCAAAAAAGCAATCTCGAACGACATATGCCGCCAAAACCTTCATGTCTACCCATCTTCAAACGAAGATCTCGACCGTTGAATGATACGAGCTTCTCATCAGGATTCAAGTGCCCATATTGTTATAAGTGTTTCGTCACTAAATCAAATTTGTTGATTCACATGAAACTTGAGTGCGGCAGTCAAAAAACTCATTTTTGCAGAATGTGTCCCAAACAGTTTCCATTGAACATTGAATTGCGCCTTCCCCAGCAATTCGGGTACTATGGAGTACAATATGTTGaaccaatgaatattcatctaaTACCATCTGGTTCCAACCAGCATCGTGAAATACTTCCACAACTGTCAAGTGTCGAATTATCAAATGTTCAAGGCTTCAAATGTCCAACGTGTGGCAGAGATTATACATTcagacaaaatttattaagaCATATGAAGTTCGAATGCGGTGGACAACGACGTTATGCGTGTGAATTTTGCCCAAAAAAGTATACGCAAAACGTCAATTTACGTCGTCATTTAATTACTCGTCACAATGTCGATATTTTAACGGCTGCACgTGGTGCCAACTGGATTGCACGAAATTATTCGAACAATTTACTTCTTCATTCTAGAGCGGCATCAACCCAGGTGCCACCATCCGTTACTGCACCAAGAACTTCATCGCAAAAAGCTACATTCGaGGGCAACAACATCTGCTTAGCATGTTCCAAGTCCTACAAATGGCGGAAATCATTGCACAGGCATGTTCGAGAGAATCCTGAGTGTTGGCCAGTGTTGCTCAATTCTGAGCCACGCAGAGGAAGTAGAAGATCAACGACTTTACATCCTTATATTGGATCTCATATCGATTCTGGTTACACATGCGAAAAATGTGAGAAGACGTATTCAAGCTCTTCATCATTGAGACGTCATTTGAGATTGGAATGCGGATTGCCACCACAATTTCACTGTCCCCACTGTCGTTTTAGCTCCAAGAGAAAATTCAACCTCAATGCTCATATAAACACCAAACATGgatattga
- Protein Sequence
- MAVTCFRCPDEKTLYQNPQSSKIATSNGGCDARNHVIERIQDDALCQLSKDFNPMDGWGTSRMRRMRGQGWYMCENCGRRYHEVKNLKRHLRNECGKRPTYQCSYCPYKATYKSYLEIHLTKHSRHDFTPRVSCTNPFGQGSECNYSSANWTLPTLPPSTSKDNNISTRRTRSTTFGDDYLFGNKGRMRRLGPRKYLCTDCGSTFALKASLTRHQSLECTREMAIAAKPKVTKQSKSIKSMKPSIPKLMKTSTPKSILSKSTSSPKSTKIKLDPDQLSPLKLKSESKKKKHTCKRCGRDYAFYTSLWRHLHYECGMEPKFTCEICCLRFAQKSNLERHMPPKPSCLPIFKRRSRPLNDTSFSSGFKCPYCYKCFVTKSNLLIHMKLECGSQKTHFCRMCPKQFPLNIELRLPQQFGYYGVQYVEPMNIHLIPSGSNQHREILPQLSSVELSNVQGFKCPTCGRDYTFRQNLLRHMKFECGGQRRYACEFCPKKYTQNVNLRRHLITRHNVDILTAARGANWIARNYSNNLLLHSRAASTQVPPSVTAPRTSSQKATFEGNNICLACSKSYKWRKSLHRHVRENPECWPVLLNSEPRRGSRRSTTLHPYIGSHIDSGYTCEKCEKTYSSSSSLRRHLRLECGLPPQFHCPHCRFSSKRKFNLNAHINTKHGY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -