Mcin000809.1
Basic Information
- Insect
- Meteorus cinctellus
- Gene Symbol
- -
- Assembly
- GCA_030523045.1
- Location
- JAPYZF010000011.1:1455109-1457781[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.14 12 6.5 0.0 1 23 368 390 368 390 0.94 2 12 0.087 7.5 7.2 1.0 1 21 390 411 390 412 0.90 3 12 4.5e-06 0.00039 20.7 1.5 2 23 463 484 462 484 0.97 4 12 1.8e-05 0.0015 18.8 1.1 1 23 490 512 490 512 0.98 5 12 0.00034 0.029 14.7 2.5 1 23 518 540 518 540 0.98 6 12 1.4e-05 0.0012 19.1 2.6 1 23 546 568 546 568 0.98 7 12 0.00026 0.022 15.1 1.3 1 23 574 596 574 596 0.98 8 12 1.3e-07 1.2e-05 25.4 0.5 1 23 604 626 604 626 0.98 9 12 0.0044 0.38 11.2 0.2 1 23 632 654 632 654 0.94 10 12 0.00029 0.025 14.9 5.1 1 23 660 682 660 682 0.98 11 12 2e-05 0.0017 18.6 0.6 1 23 688 710 688 710 0.98 12 12 0.00088 0.076 13.4 4.2 1 23 716 738 716 739 0.95
Sequence Information
- Coding Sequence
- ATGGCTGTCGTGGGTGAATTTGACTATTTGTGTCGATTGTGCGCGACAAAAACTGGAATATTAATGGGACTGCCAATATTCGAAGCCGGTGAACGAATgcgaaatattgataaaaaaattgctgttTGTTTGCCAGTGCAAGTTTCGCTGAGCGATCAGTTACCAAAAGTTGTATGTGAGCAATGTGCAtataaattggatgaaatgtTCGATTTCCGTGAGAAATGTTTGCACACGGAAGAATTATTCATGGAAATGTTGAAAGATCTGAAAACGGAGAATATCGAATCAACATTGCATGATATTGATGGTATACAAACGGTCATACATTCTGAAATAGATACGATTCATCACAATATCAATGATATCCAAagtgatattgatgatgatattcgAAATGGCAATTGCCCTGGTGGACATTCAGAAAGGAATCGTACGACTATTCATACAATGCGAGTAATGGACGACATGGATTTGGCTGGTGATGAACAAATTGGTAGCCAAGAGGAAGATAATGACACTGAAGTTACTGGGATCGACTGTTTGGATGGTGATACAGTGCGAATGGTCGATGAACATATAAGAGAGGTTTCCAATCATCAAATAGCAATGCATTTAGAGGGCGACATGACAGTAGTAGGGAATCTGACAGTTGATGATCATCTTGGAATAAATTATGTCACGACAATTGATTCGGAATCGGAAAATCAAGAACAGATTGTACATTATTGTGAGAATATCAAGTTCGAAGCAGTCACAGTGAAAGAAGATTATCAATTGCATGAGCAATTAAGTACGGCGGGGACGACTCACACAATTGACCATACAAGTGTAACAAATGACGAATTTCCTCAAGCGCACGTCGAACCTGAGAGTGATGTAGAAGAGTCATTGGTGAGTAGCGGCCACAGTGGTAGTGCTGGTGGTGATGTACAAACACCTAGTACATCCGAAACGATGCTCTCAAGTTCTTTGCCATCGACTAGTGTCGAAATATCAAAATCTTCAGAAATTATGGTAGAATATACGAAGCGAGCAAAGAATACTCTATTagaaaatagtttgaataatcCGACCTTGGATGAAACTGGATTGAGTTGGTACATTTGTCCATTTTGTAATGAAGCTGCAAATGAGCCAAACAATTTAGTGGAACACTTTGAACAACACTTTTGTTCGTGTACGTGTGGTCTATTTTTCACGAGCGTTGAGGAATTGAATATCCACAATCGACAATGTAAGCTCAAAGACAACTCAAAAGATAAGAAAGATGCGAAAATTTTAGAAACAATGGGAATGGTTCCgaataattcaacagaaaaCAACGGTGTGgcagatatgaataaaaagggTCAATCAAATGTACGACAGAAATGGACGCCAAAAGTTTGTGCGCAATGTGGTAAACAATATCGTACAAACTATAAATTACAAGAACATATGCGTAAACATACAGGCGAAAAACCGTTTCAATGTCATTTATGTGAGAAAGCATTTCGTAGTAAAATTGGTCTTGCCCAGCATACAGCAACGCACACAGGAAAGTTTGATTTCAGCTGTTCAACATGTGGCAAAGGCTTCCAGTGTAAGAGTTATCTTATTGTCCATCAACGTGTACATTCGGACTTGAAGCCCTATCCATGTGACACGTGTGGACAACattttaaaacaaaacaatcatTATTGGATCATCAAAACCGTCATCTTGGTGTGAAGCCTTACATGTGTGAAATATGTGGCAGAGGTTTTATAACAAAGGGATTGTGTAAGAgccatcaaaaaattcattcaggCACAGACAATCGTCAGTACCCGTGTGAAGTATGCAACAAAATGTTTGTTAGTAAGAGTTATTTAAATACACATTTGCGTATTCATACGGGTGAAAAACCTTATTTATGTGAGGTGTGTGGCAAAGGTTTTTTAACACGTGTAGATcttaaaattcattcaactatGCATACAGGCGAAAAGAGTTTTAAGTGTGAAATGTGTCATAAAGTATTTGCACGACGTGCAGCTCTTCGTTGTCATAGACGTTCGCACACGGGCGAACGTCCTTATCGGTGCGATGTCTGTGGTAAAACGTTTACGCAATTTAGTCCAATGGCAATTCATAAGCGTTTACACACAGGTGAGAGACCGTATGAGTGCGATGGATGTGGCAAGGCATTCGTTTCACGTTCTACGATGATGTGTCATAGGAAGAAGCATCATTTGCTGACAGCAGCGCTGACTGATCAAGATATTGaagttaatgataaaaatgagacCATCACGATAACACCGGTGAATGTTATAACGAATGGTGATGTTTCAACTGTTGTCATGAGGGATTCGAACGATACTGTTGAGATTACCGCTGACTGa
- Protein Sequence
- MAVVGEFDYLCRLCATKTGILMGLPIFEAGERMRNIDKKIAVCLPVQVSLSDQLPKVVCEQCAYKLDEMFDFREKCLHTEELFMEMLKDLKTENIESTLHDIDGIQTVIHSEIDTIHHNINDIQSDIDDDIRNGNCPGGHSERNRTTIHTMRVMDDMDLAGDEQIGSQEEDNDTEVTGIDCLDGDTVRMVDEHIREVSNHQIAMHLEGDMTVVGNLTVDDHLGINYVTTIDSESENQEQIVHYCENIKFEAVTVKEDYQLHEQLSTAGTTHTIDHTSVTNDEFPQAHVEPESDVEESLVSSGHSGSAGGDVQTPSTSETMLSSSLPSTSVEISKSSEIMVEYTKRAKNTLLENSLNNPTLDETGLSWYICPFCNEAANEPNNLVEHFEQHFCSCTCGLFFTSVEELNIHNRQCKLKDNSKDKKDAKILETMGMVPNNSTENNGVADMNKKGQSNVRQKWTPKVCAQCGKQYRTNYKLQEHMRKHTGEKPFQCHLCEKAFRSKIGLAQHTATHTGKFDFSCSTCGKGFQCKSYLIVHQRVHSDLKPYPCDTCGQHFKTKQSLLDHQNRHLGVKPYMCEICGRGFITKGLCKSHQKIHSGTDNRQYPCEVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCEMCHKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDGCGKAFVSRSTMMCHRKKHHLLTAALTDQDIEVNDKNETITITPVNVITNGDVSTVVMRDSNDTVEITAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00452103;
- 90% Identity
- iTF_00997220;
- 80% Identity
- -