Mcin008004.2
Basic Information
- Insect
- Meteorus cinctellus
- Gene Symbol
- -
- Assembly
- GCA_030523045.1
- Location
- JAPYZF010000315.1:246309-249113[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9e-05 0.0078 16.6 1.5 1 23 10 32 10 32 0.98 2 13 0.00016 0.014 15.8 2.6 1 23 70 93 70 93 0.98 3 13 6e-06 0.00051 20.3 0.4 3 23 101 121 100 121 0.98 4 13 9e-05 0.0077 16.6 3.8 3 23 129 149 127 149 0.96 5 13 3.7e-07 3.2e-05 24.1 0.4 1 23 155 177 155 177 0.98 6 13 0.0076 0.65 10.5 0.6 1 23 208 230 208 230 0.95 7 13 0.99 85 3.8 0.4 3 21 239 257 237 258 0.85 8 13 5.9e-07 5e-05 23.4 0.4 1 23 674 696 674 696 0.95 9 13 0.00021 0.018 15.4 0.2 1 23 703 726 703 726 0.93 10 13 1.9e-05 0.0016 18.7 0.1 1 23 734 757 734 757 0.97 11 13 6.4e-06 0.00055 20.2 6.3 1 23 763 785 763 785 0.98 12 13 0.00031 0.027 14.9 4.7 1 23 791 813 791 813 0.97 13 13 3.8e-07 3.3e-05 24.0 1.0 1 23 819 841 819 841 0.98
Sequence Information
- Coding Sequence
- atGCCCacgaatgatgatgataacaatTTCGTTTGCTCTGTGTGcggaaataaattcaaaaatgaacGCCAATACTTTAAGCACTTGCAAATTCATGGTGGAGCAGTTGCATGGGAATGCATTCAATGCGACGATTCTGATGTGACATTTGAATTGCGACCGAAACTCAAGGCACATAAGAATTTGCATCACAACATAATTAAACCATTTAAATGTTGTGAATGCGATTTGGTATTCGATAGAGCGTCACAATTGGATTATCACACGCGGAGTTTTCATTTGAACGAAAAGTCACAATTATGCCAAATATGCGGAAAAGGATTTTTTCGAAAGGCAGACTTGAAAACACATTTGAATGTTCATCTCGGTACGAATCAATCTATTTGTGAAATATGTGGACGCAAATTCAACCATGTCTCTAATTTAATTAGGCATTGCAGAACGCATGCagGATTGAAACCCTATCCCTGCTCTATTTGTGGCAAGAGATTTACCCAGATCAGTTCGCTTGCTcgtcataaaaatattcatgaaagatCATTGGAAAACATGACCAATGTTGCTGCCGGACAGGTTGGTGAAAAAACTGGctgcgataaaaaaaaaatcatcaaacgGCGTCATTATTGCAGAATATGTGGCGAGAGTTTTCAATTTGTCGTGCTCCTACGACAACACGAAGAAATTCACGTGAAAGAGCAGAAATCGATTGAATGTATAATTTGTTATGGAATATTTCATACTCAGGATGCTTTGCAACGACATTATTGCAGTGCAATATCGATAAATCAACGATGTGATGTGATCACAAAAGTCGACCAGAATACAGCCGATATGTTAATAAGTGGTAACGTCACgaatatgaatgagaaaaaaaagaaaaatgtatcggaaacaaaaatttatgtggAGACTGAGCAgtcaaatattaatgatggATTACAATCGCATGGAATACTCAGTCCGCAATTACGTGAATCATCTCGGAAAATGAATGTCGATGGTATTGACAATGATCGTGACGagagtataaatatttctgatattTTGAGTCCATATGattgtgatgatattgaatttacaaATTCTGAGCCAATACACAGAGAAAGTGGTAGTGAAACAtctcaaaaattcattcaaaccGCGATGACACCGACAAAAGAGTCGCCTAGTAAATGTTTTCAAGTTGAgtccaatcaatttttcattgaagtttGCGAATtggattatttgaaaaatttaggACTCCATCCGTTGGAAGTTCAGGAAAATAGCAATATTGCATATTTGCAAGATAATTTCAATGTTCCTGACATTGATAACACCGATACACTTGAGAAtacaattaacaattataaCACCGattcaacgaaaaaaagtCAAGGGCTAGATAATAATGCATCAACCCTGCGATTGGTGGAAGCTAACAACGGCAAACACTTTTATGAATTAGAAGTCAATCCGTTGACTTGTAAAAGTTTTGTGCAATCTGGGAGCAATATCAATCCATCAGGTGAGTCGGTGGAATTTCGTTTtgtggatgaaaatatttatgaacaatgGAGTCCGCAATCGTCACATATGCGGAATGATTCGATCGATTTTAGCAATCGATCAACTCACGAAGAAAACAGCCGCACAGCTTCTGCCGATTCGGGAGTGCATCAATTAAAAACTCCACATTTATCTCCGACCGAAGATTTCCAAAGCTCTATTCCAGAACAGAAATCTGAATCTGTCAAAGATTACGGGGAAGGAGCTGATCACAATAGCGACGCGATGAAAACACCAATGGTACGTCTGGTGCAGAACGAGGAAGGAGAGCAATTTTTTGAGTTGATTCGCGATCCCGTCGATTTCgatgacgatgaaaaaatgaagagtgtAGTGGATCAAGATTTTTCCAACAAAAGTAGCTACAGTTCCCGACAATATGTCGAAGGAATACCTGCAAAAAAACGTAGGGTGCACAAACTCACACACGAAAAGACGGAACGACTTAAAAAATGGAGGCCAAAATTTGAATGCAATGTttgcaataaacaattttcaacaGCATCGAACTTGAAACAGCATGTTGGTATCCATTTTTCAGACCAACAAAAGTTCCTATGCAAGGAATGTGGCATTTCATTTGCTTGGAAGTCAACATTGAATAAGCATATTGCCAGCAATCATCGTCCCGACGGTCCACAAAAATTTGTGTGTGAAATTTGCCCTAAAGTATATAGCACATTGTCGCAAGTGAATGAACATGTCAAACGAGATCATCTAAAACAACGCAACCATGTCTGTTCAGAGtgtggaaaatgtttttttaagAAATTTGATCTAAAATCGCACATACGAACTCACACAAACGAACGACCGTACATCTGTCAAGCTTGTGGGAAGAGTTTCCATCATCAGAGCCATATAATAAGGCATGAACGCATCCATTCAGGGGAACGTCCATTTTCATGTGATTATTGTCCAAAAACTTTTACACAACCGGGTTCATTGAAGGTTCATAAACAAAGACATTGCAAAATGACAAACGTTGATATATTGGACTACCgaattgatgaagatgatcCGATTACCCTCAGCTTGCTATGA
- Protein Sequence
- MPTNDDDNNFVCSVCGNKFKNERQYFKHLQIHGGAVAWECIQCDDSDVTFELRPKLKAHKNLHHNIIKPFKCCECDLVFDRASQLDYHTRSFHLNEKSQLCQICGKGFFRKADLKTHLNVHLGTNQSICEICGRKFNHVSNLIRHCRTHAGLKPYPCSICGKRFTQISSLARHKNIHERSLENMTNVAAGQVGEKTGCDKKKIIKRRHYCRICGESFQFVVLLRQHEEIHVKEQKSIECIICYGIFHTQDALQRHYCSAISINQRCDVITKVDQNTADMLISGNVTNMNEKKKKNVSETKIYVETEQSNINDGLQSHGILSPQLRESSRKMNVDGIDNDRDESINISDILSPYDCDDIEFTNSEPIHRESGSETSQKFIQTAMTPTKESPSKCFQVESNQFFIEVCELDYLKNLGLHPLEVQENSNIAYLQDNFNVPDIDNTDTLENTINNYNTDSTKKSQGLDNNASTLRLVEANNGKHFYELEVNPLTCKSFVQSGSNINPSGESVEFRFVDENIYEQWSPQSSHMRNDSIDFSNRSTHEENSRTASADSGVHQLKTPHLSPTEDFQSSIPEQKSESVKDYGEGADHNSDAMKTPMVRLVQNEEGEQFFELIRDPVDFDDDEKMKSVVDQDFSNKSSYSSRQYVEGIPAKKRRVHKLTHEKTERLKKWRPKFECNVCNKQFSTASNLKQHVGIHFSDQQKFLCKECGISFAWKSTLNKHIASNHRPDGPQKFVCEICPKVYSTLSQVNEHVKRDHLKQRNHVCSECGKCFFKKFDLKSHIRTHTNERPYICQACGKSFHHQSHIIRHERIHSGERPFSCDYCPKTFTQPGSLKVHKQRHCKMTNVDILDYRIDEDDPITLSLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00997209;
- 90% Identity
- iTF_00997209;
- 80% Identity
- -