Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0003 6.5 8.7 9.3 1 18 109 126 109 127 0.93

2 5 0.92 2e+04 -2.5 0.9 2 8 158 163 157 164 0.59

3 5 6.8e-07 0.015 17.1 16.8 1 19 167 185 167 185 0.97

4 5 2.4e-08 0.00053 21.7 15.3 4 19 234 249 227 249 0.87

5 5 2 4.3e+04 -3.5 4.1 5 10 278 283 278 287 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0003	6.5	8.7	9.3	1	18	109	126	109	127	0.93
2	5	0.92	2e+04	-2.5	0.9	2	8	158	163	157	164	0.59
3	5	6.8e-07	0.015	17.1	16.8	1	19	167	185	167	185	0.97
4	5	2.4e-08	0.00053	21.7	15.3	4	19	234	249	227	249	0.87
5	5	2	4.3e+04	-3.5	4.1	5	10	278	283	278	287	0.89

Coding Sequence: ATGTATGCTCCAACAGAGGCCAGCAGTGAAGAAGAACGGAAAGAGTATTACAAAAACTTAGAGGTGGCACTGAACAAATACCGGTCACAAAAGAACTTCATTGTGGGAAATATGAATAGTAAAGCAGATAAGAGAAGCCATGAAGATGAACTTGTTGGAACACATGGCTTAGGGATTAGAAACAAGAGGGGACAAAGATTGATCCAGTTTGCCCAAGAGCATAGATTAAAATGGAGTTGTGGTTGTGGCAAATTGAAAAAAGTGGTGAAATGTGGTTCAGATCAGGCACTACTGTGTAATGAGCAGTGTGGCAAGAAACTGAATTGTGGGGTACATCAGTGTATAAAATCTTGCCATATCAACAGCTGTTCTGACTGTGAGCAGCTAGTGCTGCAAGtGTGCTATTGCGGGAAGCAGCAGAAGGAAGTTCAGTGCACAAGAGAAACAGCAGATGTAAAGCATTTCTCATGTGGAGGCAAATGTGAGCAACTTTTGAGTTGCGGAAACCACCACTGTGAGCAGGAATGCCATCCTGGATCATGTCTTGACTGTCAGCTGACACCACTAAAGGTGACACACTGTGCTTGTGGGAAGACTGCACTCACCAAGGAACAACTCAGGTCAAGTTGCAAAGACCCTGTACCAGTTTGTTCTCTTGTTTGTGGCAAGAAGCTTTCTTGTGGGCAGCCAGcttCACCACACAAATGTGAGCAAGTGTGCCATACAGGACCATGCCCAGAATGTCCTCGCACAACAATGGTAAGATGTAGATGTGGCAACATGGATCGTGAAATACCTTGTATTGAACTTACCATGAAGGCAGATGATGCAAGATGTGAGAAGAAGTGTacaaagtGCAAAGGTGAGAAGGTAGTCAAATGTGATTGCAATGAACAGATGAGCAGACTGAAGTGTGGGGAGGGATGA
Protein Sequence: MYAPTEASSEEERKEYYKNLEVALNKYRSQKNFIVGNMNSKADKRSHEDELVGTHGLGIRNKRGQRLIQFAQEHRLKWSCGCGKLKKVVKCGSDQALLCNEQCGKKLNCGVHQCIKSCHINSCSDCEQLVLQVCYCGKQQKEVQCTRETADVKHFSCGGKCEQLLSCGNHHCEQECHPGSCLDCQLTPLKVTHCACGKTALTKEQLRSSCKDPVPVCSLVCGKKLSCGQPASPHKCEQVCHTGPCPECPRTTMVRCRCGNMDREIPCIELTMKADDARCEKKCTKCKGEKVVKCDCNEQMSRLKCGEG

Sequence clustering based on sequence similarity using MMseqs2