Basic Information

Gene Symbol
nfxl1
Assembly
GCA_030762175.1
Location
CM060837.1:71814324-71829578[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 9.4e-09 0.0002 23.1 17.8 1 19 71 89 71 89 0.99
2 15 0.017 3.6e+02 3.1 11.7 3 18 126 141 114 142 0.87
3 15 0.19 4.1e+03 -0.3 0.5 1 10 151 160 151 160 0.75
4 15 0.00024 5.3 9.0 18.3 1 18 176 193 176 194 0.91
5 15 3.1e-11 6.7e-07 31.0 14.4 1 19 203 221 203 221 0.99
6 15 2.6 5.6e+04 -3.9 1.7 9 13 227 231 225 231 0.71
7 15 0.76 1.7e+04 -2.2 1.0 5 10 249 254 249 254 0.89
8 15 0.00052 11 7.9 7.4 10 19 270 279 267 279 0.90
9 15 0.003 64 5.5 6.2 3 12 290 299 289 299 0.91
10 15 3 6.5e+04 -4.2 3.5 14 19 328 333 328 333 0.86
11 15 0.47 1e+04 -1.5 0.8 6 10 359 363 358 363 0.89
12 15 5.1e-05 1.1 11.1 3.7 1 12 369 380 369 380 0.96
13 15 7.5e-07 0.016 17.0 16.5 3 19 410 426 409 426 0.92
14 15 0.00016 3.5 9.5 15.2 1 18 469 488 469 490 0.89
15 15 1 2.2e+04 -2.6 0.9 6 10 519 523 518 523 0.89

Sequence Information

Coding Sequence
ATGGAAGACCTTCATTTGCAATCATGTCATGGAAATAGTCACACTGCTCCAAGTCAATGGCAACGCTGCTTTGGAGACCAAAATCCTACAGATCATCTCACATGGGCAGATACGGATCAGTTACCATCCCTAGAATCATGGTGGTCTGGTCCTAGCTGGCTTGTACAAGATGATGCCTGGCCAGTTGATGTTTGTGGCAAACCCCTGAGCTGTGGGCACCATACCTGTGAGCAAATCTGTCATCGAGGATCCTGTGGAACATGTCCACTAGCTCAGGATCGTTTTTGTCCATGTGGTAAAACATCATACATACTACCATGCACAGAAGAGACACCCACCTGTGGTGATACATGTGGTCGCACACTTGAGTGTAAAGCACATGTATGTTCAAGAAGTTGTCACAGGGACAAATGTGGCAGTTGTTTGGAAACTGTTTCAAAGCAGTGCAGATGTGGTCTACATACCAAGGAACTTCCTTGTCAGAAAGAATTCTTATGTGAAACCAAATGCAAGCGCACCAAAGACTGTATGCATCATCCTTGCAACCGTAAGTGCTGTGATGGAAATTGCCCTCCATGTGAGAAGCCATGTGGAAGAATGTTAAGATGTGGGAACCACAAATGTGAATCAGTATGTCATCGAGGGCCTTGCTATCCTTGTCCTCTAACTGTGGAGGTGAAATGTCATTGTGGCCTCACTGTTCTGACGGTTCCTTGTGGACGCAAGAAACACACACGTCCACCACGTTGCAGCAAACCTTGTAGAATTGAACCAAACTGTCATCATCCAAGACGGGAGCCTCACCGTTGCCATTTTGGGGACTGTCCACCATGTAGGCAAGTATGTGATAAGATCCATAAGCTCTGCAGGCACAAATGTCCTGCACCATGTCACTCGGCAGTATGGGTGAAGATACAGGAAGAACGCAAACCAGCAGGACCATGGGAAAAGATTCAGCCACACATTGAGATGAGAGATCTACCATGTCCTGATTGCAAGGTTCCAGTTGAAGTACAGTGCATAGGAGGTCATGAAACCAGTAAATGGCCTTGCTACTTAGCCAAACCCTCATCATGTCAGCGCATCTGTGGACGCAAGCTTTCGTGTGGCAATCATTTTTGCAGTTTGCCTTGCCACACTGTGGAAAATGCAGCTGATGAGTTGTCAgcAGGGAGTAATTGTGAGATATGTGAATTTGGTTGCACTAAACAACGTCCTGAAGGTTGTACACACACCTGCCTTAAGCCATGCCATCCAGGCAGCTGCCCCCCTTGCAGTCAGATGATACGCATACGCTGCAACTGCACTTTAAACCAGTTGTATATACGCTGCAGTGAATGGACATCTGCCAAGGAAAAAACAGTGTTGCAAAATTGTGGAAACCAGTGTCCAAAATTGTATCCCTGTGGACATCGGTGTCGGTCAGATTGCCATACTGGTGAATGTCCAGAACCAGAATCATGCCACAAAAAGGTGAAGGTGACGTGTTCCTGCAAACGCTTGCGAAAAGACTTCCCGTGCAATATGGTTAGATCTGGAGAAGCAAAGGTTGAATGTGATGAAGTATGCAGGCAGAAAAAAGAGGAGGAATTAAAAGCTAAGGAGGCAGAAGAAATGGCCCGACTTTTAGAAGAAGAGCGCAGGAATCGAGAGGAATTGGAAAAATTCAATAAGAAGTTTCAGGGTACAAGAAATGGCAAAAAGAATCGTCGTAAACACTTCCAAGCAGAAGAATCTGCATCTTTGCTGTCCAAATATTGGTTTCTGTTGATCTGCATGTCTGGATTAATCTTGGCCTTCTTTGCAATAGTTCTTTGGAAGTAA
Protein Sequence
MEDLHLQSCHGNSHTAPSQWQRCFGDQNPTDHLTWADTDQLPSLESWWSGPSWLVQDDAWPVDVCGKPLSCGHHTCEQICHRGSCGTCPLAQDRFCPCGKTSYILPCTEETPTCGDTCGRTLECKAHVCSRSCHRDKCGSCLETVSKQCRCGLHTKELPCQKEFLCETKCKRTKDCMHHPCNRKCCDGNCPPCEKPCGRMLRCGNHKCESVCHRGPCYPCPLTVEVKCHCGLTVLTVPCGRKKHTRPPRCSKPCRIEPNCHHPRREPHRCHFGDCPPCRQVCDKIHKLCRHKCPAPCHSAVWVKIQEERKPAGPWEKIQPHIEMRDLPCPDCKVPVEVQCIGGHETSKWPCYLAKPSSCQRICGRKLSCGNHFCSLPCHTVENAADELSAGSNCEICEFGCTKQRPEGCTHTCLKPCHPGSCPPCSQMIRIRCNCTLNQLYIRCSEWTSAKEKTVLQNCGNQCPKLYPCGHRCRSDCHTGECPEPESCHKKVKVTCSCKRLRKDFPCNMVRSGEAKVECDEVCRQKKEEELKAKEAEEMARLLEEERRNREELEKFNKKFQGTRNGKKNRRKHFQAEESASLLSKYWFLLICMSGLILAFFAIVLWK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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