Mvio016643.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- ush
- Assembly
- GCA_030762175.1
- Location
- CM060834.1:19612347-19653672[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.03 3.7 10.0 0.1 1 20 374 393 374 395 0.94 2 9 0.00016 0.019 17.2 1.3 1 23 465 487 465 487 0.98 3 9 0.058 7 9.1 1.0 2 21 526 545 526 546 0.92 4 9 0.56 68 6.0 4.6 2 21 979 998 978 999 0.94 5 9 0.007 0.85 12.0 0.1 1 20 1065 1084 1065 1086 0.93 6 9 2.6 3.2e+02 3.9 0.1 2 23 1138 1159 1137 1159 0.95 7 9 0.033 4 9.9 1.4 1 23 1165 1187 1165 1187 0.99 8 9 0.033 4 9.8 1.8 1 23 1244 1267 1244 1267 0.94 9 9 0.1 13 8.3 0.8 2 21 1411 1430 1410 1431 0.93
Sequence Information
- Coding Sequence
- ATGACATTCCGTTGTGTTGAGCTGTTACTGGTCTTCCGGAAAGTGACAAGTCAACAAGGTTCACATGGCAAAGAATGTGCACCACCTGAAGATGTTGCTACAGTCTTCCCGTATACACCCAACAATCCCCTGCACATTTCACACAGCACAGTTTGTCTCAAACACTTGGTCACTTATTTGCGCCTCGGGATTACAAGTGCTGCAGCTCAAACTGTGCTCTCTTGTGCAGGTGAAGACGAAGAGGAATGGGGTAGCGAGGCTGAGGGAGATGCGGGGGCGACACCTACGATCACCGTCGATACTCCCGTCACCACCGCCAcaaccacaaccaccaccacagCTAGTCCAGAAGAGCAGAACGCCGAGGTACCGCTTCCGATCCCAGTAATCAAGACGTCGCCTCCGTCGTCACCTGTGCAAGGCGCTGGAGAAGGAACGCCGCCTCCACCGCCACCTCCGAGATTGAGACTGAAGGCGGGGTTGGCGACGGATCCGGCGCTGCGTGCCGCTCCTAGTCCTGTTCTGACGTCTGCATCTGCTCCAGCACCTGGGCTCGAATACCTCGCTTCACTGAACCCAACCTTCCACACAGCTCTTCCTACAAGTCAGTACTTCTGTCTACCACCAGAAGGTGCTGGTACTGTTCCTCAAGCGAGACTCAAACCCGACTCTTTGGAATCTGCACGGCAAGAGCAGGTGAACTGGACAATTGAGCAACGGAGCCAAGTTCTCTATACTCCACATTCAACCTTGGGGCCCCAGGCGGAAGAGAGGGGGTACGGAGAAGACCTGCAGAGCGCTATGTTGCTTGTATGTTTTCCCCTAGGGTGCCTTATGGACGAGACTCAGTTATGGTTTGGGCACTCAATGTGTGTCACAGTTTCTGGAAGAGTGATCTGCTCGAAACTCGAATCTCAATGCCATCGAGCATTTGTGAGATATGCTCGGCAGTCGCATTCGTCGACGAGTTTTCTACACACTGTAGGGGTAACCCTTATTAAGGAATGGGATGCAATTCAACAAATTGTCATTTATACCAAGAATTTAAGCATGCCGGCTAGAATGCAAGTTGTTGTTCAAGCCAGATGTGGCAACATTCCTTACCGAACATTGCCCGTGTACATGTGCAATCCTTGTGGGATCCGATACAGCTCGCTCAGCACCCTGGAAGCGCACCAGACTTACTATTGTTCTCATCGGACGGGGGCGGCTGGAACTCCGGCCCCTAcctctgctactgctgctgccgcCGCCACCAGCACCAAAACTGCTGCTCATAAAGGTCGTGGCGACAGTGACAGCGAAGATGGGAAGCTGGTAGGTGGAGTGACTGGAGGTGAAGAAGTGGAGGGTGATGTGAATGGTGCCAAGGCTCAGAGGACTGGGAAACAGTATGCCTGCCCTCACTGCTCCTACAGTGCTGACAAGAAAGTCAGTCTCAACAGGCACATGCGCATGCACTCTACGTCCCCGCCAGTGCCTACCACGACTCTCAATGGCGCTACTGTGCCACCTCCCGTAAACTCCAGTGGCCAGACTTCAAATCCTGGAGATGCACTTCACCTGGTTGATCGTTATTGCCAAGACTGCGACATCCGCTTCTCTTCAGTAAAGACCTTCAGGGCTCATAAGATGCACTACTGTAGCACCAGGCATGTGGTGAAACAGCCACCAGTAAACAAACCGCCTGCAGCTGCTGGAGGCAGTGGGGAGTCCATCACTGGGTCTCCACCTCCAGCCTCCACGTCCCCAAGTTCACCTCCTCCACCTCCAAGGCGAGGTTCCCCTCCAGCTCCTTTCCTAGCTCTGCCTACCAACCCTATCCTCCTTGTTCCTTATGCCCTTTTTCAAGGTGCCAGCTTACTAACAGGATCTGCAGCAATGGGATTGCCTGCGCCAGACACAGCCTGCCTGTTGCTACCAAATGGAACTATTCAGCCCATGGCACAAGCAGTGCATCCCCCTgtaccaccacccccaccacaaGCACCCAAGGAGGAGCTTAGGACATCTGGAGTGGTGGTTGATCCAACTCGTGCATCTGAACAGGTGAAAACTTCATGTTCAACTAGAACAACACCTTCTGCcacatcatcatcttcttcatcatcatcaagaGTGCCACAAACAACAAGAGAGGATTCTGTATCTGGTGCAGCACCATTAGACTTAAGTGTTCGACGCTCTAGTGGTAGTGAGTTGGTAGTAGACTTGGACAATGATCAGGATCACGTGGACGTGGGTGAGGATATAGTTTGTGCACCTTCGATTCCAGCCATGCTAATGTCTGCTTCTCCAAGTCCATCTCCTCCTGCATCTCCAGCTTCTTCCTCCAACCGACGTGGTACAGGCTCTTCGCCTCCATCAAAACGACTGCGCACAGAGTCCTCAGGTGGCAGCAACAGTCCAAGTCCAAAGGCATCATCTCCACGTTCCCCACGTAGACTCTCCACCCCAAATGGTGTTATTACCAATGCAAATCAGCAGCAGCGAAAGGTCCTGGCTGCAGCATTAAGTCAGACACTCCAGGGGCAGGAGAGCAACCTCTCCAGTTTGCTACTTGCAGCAGTTGCTGCAACTCAACACAGTGATGTAACTGGAGGAAATGGTGCACCACTTCTCAGGTCTCCCCCAGTATCACTTCCATATCCTTCTCCTCTTCCTGCAGGAAAACAGGCATTACCTGCCAAGTCACAGTCTGCCAAAGCCCCTCCCATTACACCTCTCATCCCTCCCTCACTGTTGCTGCCGAATCCTAGAGGAGCCACAACAACTCCTGAGCATCTTTTGTCCCCTGCAGCACTGTTGCCACTACTAACTTCTGAGATGGCACTGAGGATGGCTACGGAAGCTGCAGCAGTAGCCTCAGCCGcagcagcaccaccaccaccaccacctccaccacctCAGGTGTTAGTGAAACAAGGTGTATCAAAGTGCAGGGAGTGCAATATTGTATTCTGTAAACACGAAAACTACATGGCACACAAGAAACATTACTGTTCTGCACGTCTAGAAGGAACTGCCATGGCAGTTGAGGAGGCTGGGGCAGGGATGACTAGTCCTGGGCAAGCAGTCCCTAGTTCCCCTAACACATCCAACTGTGGATCACCACCCCACAGCATTTCTGGATCAAAAGAGAGAGCCAGCCCAACATCCCCTGGTGTGCAAAAGCCACCAACACTTTTACAGTTTATCTGTGCTGCCTGTGGTATCAAGTTCACATCATTTGACAATTTAACAGCTCATCAAGCTTACTACTGTCCAAAACGAGCTGAAGTAATAGGCAAAGCAGAGCTAGACAAGACTGGAGCTTCATCTCGCAAATGTGTCAAATGCAAGATGACGTTAGACCCACTCATATCTCATCAGTGTGCTGTTGGAGGCAGTGCTGGCAGTTCTGGTGGTTGGAAATGTCCATGCTGTGATGTAGTCAGTCCCACAGCAAATGCCGCACAAAGGCATATGGATTCCCACAGTGGGGTAAAGGCATTTCGATGCACTATCTGTCGGTACAAAGGCAACACTCTGCGAGGCATGAGAACACATATTCGTATGCACTTTGAAAAGAAGTCTGCAGATCTTCAGGAGGAGAACTTCATCTCTTGCATCATCAACGATGAAGCAACTGTGGCCCCCCCACAGCCAATATCATTGCCACCAGACACTGTACCAATGGAGATGGCAGCACTTGCAGAAAGTAGTGAGAATGGGCGAACAGAGAAATTGCATTTCTGTGAGCTTTGTAACTACAGCTCCACATACAAGGGTAATGTCGTAAGGCATCAAAAACTGATACATGGAAAGTCCGAGGAAGGTTCCTCCTCACCTACAAATTTGGCAGTCAGCCCTCAAGATAGCAGAGGTGAAAGAGAAGGAACTCCAGAGCTTGCTGTCAACCAGGAGAATACCATTAAGCAGGAAGTTCCAGAACAGGTTCCAGTGAAGGAGGAGGGGCAGTTGCAGCCATATccagaggaagaagaagaatatgtaGAAGTTGAAGACCCTCAATCAGTCACCTCTATCAAAGATGAGCCAATCATTGTAACATCAGAAGCTGAGGACATGGCTGTTGGTGACAGCCATTTAGAAGTATCACGAACCCAAGACTCTGACAAAGGTAGTCAGTTTTATGGGAATGAGCACAGTGCAGCAGATGAGGGCGTTGGGCAAGACCTGCCGGCAGGTGCAGTCAATAATAATGGTGCAAAAAAGGCTGGTTCCAAGTACTGTAAGTCATGTGACATATCTTTCAACTATCTGTCAACATTTATAGCACACAAGAAGTTCTACTGCTCAAGCCATACAGGGGAAAATGCTAATGGCAATGGGCGGACAGCTGAAACTTCAGTGCTATAG
- Protein Sequence
- MTFRCVELLLVFRKVTSQQGSHGKECAPPEDVATVFPYTPNNPLHISHSTVCLKHLVTYLRLGITSAAAQTVLSCAGEDEEEWGSEAEGDAGATPTITVDTPVTTATTTTTTTASPEEQNAEVPLPIPVIKTSPPSSPVQGAGEGTPPPPPPPRLRLKAGLATDPALRAAPSPVLTSASAPAPGLEYLASLNPTFHTALPTSQYFCLPPEGAGTVPQARLKPDSLESARQEQVNWTIEQRSQVLYTPHSTLGPQAEERGYGEDLQSAMLLVCFPLGCLMDETQLWFGHSMCVTVSGRVICSKLESQCHRAFVRYARQSHSSTSFLHTVGVTLIKEWDAIQQIVIYTKNLSMPARMQVVVQARCGNIPYRTLPVYMCNPCGIRYSSLSTLEAHQTYYCSHRTGAAGTPAPTSATAAAAATSTKTAAHKGRGDSDSEDGKLVGGVTGGEEVEGDVNGAKAQRTGKQYACPHCSYSADKKVSLNRHMRMHSTSPPVPTTTLNGATVPPPVNSSGQTSNPGDALHLVDRYCQDCDIRFSSVKTFRAHKMHYCSTRHVVKQPPVNKPPAAAGGSGESITGSPPPASTSPSSPPPPPRRGSPPAPFLALPTNPILLVPYALFQGASLLTGSAAMGLPAPDTACLLLPNGTIQPMAQAVHPPVPPPPPQAPKEELRTSGVVVDPTRASEQVKTSCSTRTTPSATSSSSSSSSRVPQTTREDSVSGAAPLDLSVRRSSGSELVVDLDNDQDHVDVGEDIVCAPSIPAMLMSASPSPSPPASPASSSNRRGTGSSPPSKRLRTESSGGSNSPSPKASSPRSPRRLSTPNGVITNANQQQRKVLAAALSQTLQGQESNLSSLLLAAVAATQHSDVTGGNGAPLLRSPPVSLPYPSPLPAGKQALPAKSQSAKAPPITPLIPPSLLLPNPRGATTTPEHLLSPAALLPLLTSEMALRMATEAAAVASAAAAPPPPPPPPPQVLVKQGVSKCRECNIVFCKHENYMAHKKHYCSARLEGTAMAVEEAGAGMTSPGQAVPSSPNTSNCGSPPHSISGSKERASPTSPGVQKPPTLLQFICAACGIKFTSFDNLTAHQAYYCPKRAEVIGKAELDKTGASSRKCVKCKMTLDPLISHQCAVGGSAGSSGGWKCPCCDVVSPTANAAQRHMDSHSGVKAFRCTICRYKGNTLRGMRTHIRMHFEKKSADLQEENFISCIINDEATVAPPQPISLPPDTVPMEMAALAESSENGRTEKLHFCELCNYSSTYKGNVVRHQKLIHGKSEEGSSSPTNLAVSPQDSRGEREGTPELAVNQENTIKQEVPEQVPVKEEGQLQPYPEEEEEYVEVEDPQSVTSIKDEPIIVTSEAEDMAVGDSHLEVSRTQDSDKGSQFYGNEHSAADEGVGQDLPAGAVNNNGAKKAGSKYCKSCDISFNYLSTFIAHKKFYCSSHTGENANGNGRTAETSVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -