Mvio002388.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:79696837-79711313[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3e-05 0.0037 19.4 1.3 1 23 179 202 179 202 0.94 2 10 7.1e-06 0.00086 21.4 2.8 1 23 217 241 217 242 0.95 3 10 0.0005 0.061 15.6 1.4 1 23 388 411 388 411 0.94 4 10 0.00018 0.022 17.0 0.6 3 23 423 445 421 445 0.91 5 10 6e-06 0.00073 21.6 1.0 3 23 453 473 452 473 0.97 6 10 0.00013 0.016 17.4 0.3 1 23 491 513 491 513 0.97 7 10 0.003 0.36 13.1 0.2 2 23 891 913 891 913 0.95 8 10 0.11 14 8.2 0.1 2 22 920 940 919 942 0.86 9 10 0.00078 0.095 15.0 3.1 1 22 991 1012 991 1012 0.96 10 10 0.14 17 7.9 4.9 2 23 1018 1040 1017 1040 0.93
Sequence Information
- Coding Sequence
- ATGAGCCTTCAGAATCAGAGCCAGAGCTACTCAGGAGATGGTGGTGGAGGTGGCAGTACAAGTAGCAGCGGAAATTTTGCAGATCACAGCAGTATTGGCGTTGGGACAACTGCACCTGATGGCTACCTTACTGCAATTACTGGGGGTCGTACAGAATTTATTTCACCAGCAGATGTTCTCAAGCAGGTGAAGCTTGGAGCAGATCGATGTGGAGGAGGGGGATTTGACCCAACATCTTATTGGGGTAAGCCTGAACATTCATATCATCCCCAGCATCCCCAGTGGGGATTCACAGGTGACCATGTTCCATCAACTACCTCCACAGGTGCAAGTGCTGTGGCTGCTGCAGCCACTACTGCAGGACTCATTGGTATTGGAGGCTTTGGAGCTGGGGAGCCGCTTCAGGCAACCACTGGTTACAATACAGGGTTGTTTGTACCCAACATACCCAATGTGCCTGTACCTTCTGATGGCATCACAGTGCAGCATGCAGAACGCAACGCACAGAGCAGTGGAAGCAGTGACCAGGGTCCATTCCAGTGTCCGCATTGTGCTCGAACATTCAGTCGACGTCAAAATCTAGCCATGCATATAACATGGCAACATGGGGATGGAAGTGGTGGCTCTTCTTCTTCTGAGCAGCGTTCATTTCGTTGTGACATAGAAGGTTGTGGTAAGACATTTCGTAGACGAAACAATCTCACCCAACACACCAAACTGCATCATCAACTAcagccaccgccaccaccacatccaccacagcagcagcaacagcagcaaccaTTTGATGCAACTTCCAAGTCTGGAAATCCATCAAATTTTAGTTGTTTGGATGGTATCTATGCAGGTCGCAGCTTAGTAAATCAGCAGCTACCAGGTGGATTTACTACCAATGCAACATTCAACTATAGTGGCATGCCCCCAAACCACAACACTAACACAGAAAGTGTAGCTACTGGTACCTCTACTGCTGGCAATGGCAATGGTAGCAACAAtaacagcagtagcagtagtgccCCCAGTGGTGGCTGTAATGGTGAGGCCAATGCAAATAGCAATAGCAGTGGAAGTGGGAAGAGAAGTGGCTGGAGTCGTCATGCTCGCCGTGGAGCAAGTGAAATCTCGCCTGAAGATGTGGCATCAGGTGCTGCAGCTACAGTGTATGAGTGTCCTCATTGCTCTCGAAGCTTCACTAAGCGACAAAGTCTTGGCCTCCACATTACTTGGTCCCATAATCCCGATGGTAAAGCAGAGCGCACCTTTCTCTGTGAACGTCCTGGTTGTGAAAAGGCATTTAGGCGCAAGAGTTCCCTAGCACAGCACCTTAAATTTCATGAGggtttgaaaacagaaatttgtcCAGTCTGTGGAAAAGGTTTTGTTCATCGTTATGAACTCAATCGTCACCGAAAGTATCACCCTCAAGATAGTTCTGCATCTAATTCAGAAACTGGTGGTGGGGGTACACGTCATGTGTGTTCAGGATGTGGGCAGGCTTTTAACAGGGGAGCACAGCTTACAATACATCGCAGAGCACATCCTTCCTGTTGTTCCAGCACTCCACCATCCATTCAGTCAAATAACTTTACTCAGCGAGTAGAGTCAGACTCAGTCCAAACTCCcaggacagaaccatcactgaTCTCCAATGTAGCAAGTAGCACCCCTATGCCCACTaccacaacaacaataacaacgacaacaacaactGCAACTCCATATCATCAAGTGCATCCAAGCTCAAACCTTCCTCCTCAAGCAACAACTGCAGCAAGTTTCTCACCTCATTTCCATCACCTTCAGCAGAAAGAAAATTCTGCTTCCCTCCATCGTTCTACTCAGGTATTACAGGCATCCAATATGCGAAATCCTCCCACAGGACTTATACAACATCCTTACACGTCTCTTTCCACTCTGCCAACACACTTTGCTCCAGCAACAGGTGGATTTGCTCTTAGTATGCCCCCAGCCCATCACCACAATCATGCAAGCCAGACAATAAACCATGTGACACACAATGAATCCTTAATTGGCAATGTTGCAGCAGCATTATTGGACAAAGCTCTTGACAAGGCTGTAGCTGCAGCAGGCTGCACACCACCTgcacaacaacagcagcagcatcTCCTTCAAGTCTCCATGGGCATACTTCATGGAGATTCTGAATCTCCAAATGTTCACTCTGTAGGTTCAGAACGAGAATCACCTAACCATCACTCAATGGATACGTTGCTCTCTAATGCAAGCTCTGAATCACAGAGTGTTCATCCTCCCAGCAATACAGTCAATCAGGTACATGGTTCAGAAGCTACCACTCTGCAACATACCGGTTGCTCCAACACTTCCAATGTTGCTGAACATTCTGAATATAGTCCTCTAGGTTGGAATTCTAACATGGATCACAGAACTGTGGTATCCAAGGGCATTGAAATGGGTTTCCTGAAAACTGGTTCAGAGGCTAATGCTGTCACAACCAAGGAGAGTGTTAATGATGTAGATGTAAAGAAAGAGAATTTACTAGGGGAAAATAAGCACTCTCTGCAAGAACAGAAAACAGCCATTTGGAGAAGGGTTATGCTTAAATGCCAAAAGCAAAAGCACATTCCTCAGAGAATTAAAATCTGGAGATCACAAAGTCGTGAGCAATTGCTTTGCATTGCATGGAAAGAATATTGCAATGTCTGTGGCGTAAAACTTTCTACAAAAGGCATGCTTACCCTTCACTTGCGGTGGTTGCATTCAGATGCTAGACCTTGGACTTGTTggaaatgcaacaaaaaattttttaGCTCAGGTGCAATGCTGCTGCATGCCATAGCATTACATCAGGAAAGTCGTCCTGCTGCATGTCCTCGCTGTGGGTGCATGCAGGGAGGAATGGCAGCTCTTGCAAAACATAGCAAATGGTGCCGCATGAACAGAAAGTGTCGGAAGAGAACTCAAACTAATAAAACATCCACCAGTGTAGTTCACAGATGCAGAACTTGTTCCAAAACCTTTTCTCATTTGGCAGGTCTAAAGAAACATTGGAGAACACAAGAAAGATCAAAGACATGCCTTATTTGCAAGAAGAGGTTTTGCACGTGCCAAGGACTGGAGATGCACAGGGAAAATGCTCATAAATCAACTGCCATTAATGGAATTGTCGCACAGAAGCAAAAGGCTAAAGTTAGCACTGTTAAGGTGCAGAACAAATTTTCAACAAAGGGAATTTTAAGCAGTTGTGAAAGTGGGAACAAATGTGTCCCACAAAAGGAAGATAATTCTATACATACATTGGCAGCTTTAACCAGATGA
- Protein Sequence
- MSLQNQSQSYSGDGGGGGSTSSSGNFADHSSIGVGTTAPDGYLTAITGGRTEFISPADVLKQVKLGADRCGGGGFDPTSYWGKPEHSYHPQHPQWGFTGDHVPSTTSTGASAVAAAATTAGLIGIGGFGAGEPLQATTGYNTGLFVPNIPNVPVPSDGITVQHAERNAQSSGSSDQGPFQCPHCARTFSRRQNLAMHITWQHGDGSGGSSSSEQRSFRCDIEGCGKTFRRRNNLTQHTKLHHQLQPPPPPHPPQQQQQQQPFDATSKSGNPSNFSCLDGIYAGRSLVNQQLPGGFTTNATFNYSGMPPNHNTNTESVATGTSTAGNGNGSNNNSSSSSAPSGGCNGEANANSNSSGSGKRSGWSRHARRGASEISPEDVASGAAATVYECPHCSRSFTKRQSLGLHITWSHNPDGKAERTFLCERPGCEKAFRRKSSLAQHLKFHEGLKTEICPVCGKGFVHRYELNRHRKYHPQDSSASNSETGGGGTRHVCSGCGQAFNRGAQLTIHRRAHPSCCSSTPPSIQSNNFTQRVESDSVQTPRTEPSLISNVASSTPMPTTTTTITTTTTTATPYHQVHPSSNLPPQATTAASFSPHFHHLQQKENSASLHRSTQVLQASNMRNPPTGLIQHPYTSLSTLPTHFAPATGGFALSMPPAHHHNHASQTINHVTHNESLIGNVAAALLDKALDKAVAAAGCTPPAQQQQQHLLQVSMGILHGDSESPNVHSVGSERESPNHHSMDTLLSNASSESQSVHPPSNTVNQVHGSEATTLQHTGCSNTSNVAEHSEYSPLGWNSNMDHRTVVSKGIEMGFLKTGSEANAVTTKESVNDVDVKKENLLGENKHSLQEQKTAIWRRVMLKCQKQKHIPQRIKIWRSQSREQLLCIAWKEYCNVCGVKLSTKGMLTLHLRWLHSDARPWTCWKCNKKFFSSGAMLLHAIALHQESRPAACPRCGCMQGGMAALAKHSKWCRMNRKCRKRTQTNKTSTSVVHRCRTCSKTFSHLAGLKKHWRTQERSKTCLICKKRFCTCQGLEMHRENAHKSTAINGIVAQKQKAKVSTVKVQNKFSTKGILSSCESGNKCVPQKEDNSIHTLAALTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -