Basic Information

Insect: Metallyticus violacea
Gene Symbol: -
Assembly: GCA_030762175.1
Location: CM060832.1:6487863-6527888[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.03 3.7 10.0 0.1 1 23 115 138 115 138 0.97

2 12 0.069 8.4 8.8 0.1 2 23 144 165 143 165 0.96

3 12 0.54 66 6.0 5.3 1 14 199 212 199 220 0.82

4 12 0.00031 0.038 16.2 1.0 1 23 229 251 229 251 0.98

5 12 0.00069 0.084 15.1 0.4 1 23 255 277 255 277 0.98

6 12 0.049 5.9 9.3 0.1 2 19 305 322 304 326 0.90

7 12 2.4e-05 0.0029 19.7 1.6 1 23 331 353 331 353 0.98

8 12 0.0045 0.55 12.6 0.3 1 23 359 381 359 381 0.98

9 12 0.0096 1.2 11.5 2.0 1 23 387 409 387 409 0.95

10 12 3.6e-07 4.3e-05 25.5 2.6 1 23 415 437 415 437 0.99

11 12 5.4e-05 0.0066 18.6 1.8 1 23 443 465 443 465 0.98

12 12 0.006 0.73 12.2 0.2 1 23 482 504 482 505 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.03	3.7	10.0	0.1	1	23	115	138	115	138	0.97
2	12	0.069	8.4	8.8	0.1	2	23	144	165	143	165	0.96
3	12	0.54	66	6.0	5.3	1	14	199	212	199	220	0.82
4	12	0.00031	0.038	16.2	1.0	1	23	229	251	229	251	0.98
5	12	0.00069	0.084	15.1	0.4	1	23	255	277	255	277	0.98
6	12	0.049	5.9	9.3	0.1	2	19	305	322	304	326	0.90
7	12	2.4e-05	0.0029	19.7	1.6	1	23	331	353	331	353	0.98
8	12	0.0045	0.55	12.6	0.3	1	23	359	381	359	381	0.98
9	12	0.0096	1.2	11.5	2.0	1	23	387	409	387	409	0.95
10	12	3.6e-07	4.3e-05	25.5	2.6	1	23	415	437	415	437	0.99
11	12	5.4e-05	0.0066	18.6	1.8	1	23	443	465	443	465	0.98
12	12	0.006	0.73	12.2	0.2	1	23	482	504	482	505	0.95

Sequence Information

Coding Sequence: ATGGATGGTTCAGAATGGGATGAAGAACATGATTGGACAGGAGGCTACAAAGTGGCTAGTGATCTGTGCAGAATTTGTGCTGAAGTAGCAAGTGACATCATTCACATTTTTGGGGTGCGAGGCACTGAGTTGCAGCTTGTTGATAAAATTCACATGCACCTACCGATAATGGAGAAGTCTGAATACAAAACAGTTGCAGTAAAACTGAAAGATTCTCCTAAAGATGAAATGATGGAAATACTAAAGACTGAAGATGAATGTGTAGTGaaGAAGCAAGAAtatgaagaagcagaagaagaagagtgTGTGATGGACTATGCTGCCGGGTGGGAGGCAATAGAGTACGTATGCTACTACTGTAATGAAGGAGTAATTGGCAAAACAAACTTTGTTCTACACCAGATGTCTGTTCACCAAAATGAAGTTATCAGCTGTCCCAGCTGTGAATTGGTGTTTGAACTGCAGGAGGAATTTGAAGAACACTTCAAAAGCCACATgggggaagaggaggaggaagaagaagaagaagaagatggggAGCAGTCTTCTAAAAAAGTAGATAGGTGTGGAGACGAATATGGCAAGAAGAAAAAGTACCAGTGTGCAACATGTGGCAAGGTGTTCAGTTCAGAGTTCAAATGCTTACATCATTCCTGCACCAATAAAGACAGGGAGGAAGCATATTTTGAATGTCCTATGTGTGATCGCAAGTTTTTGCAAGGCAGTACACTGTCAACTCACATGAAGCGGCATAAGGGCATCTTCACCTGCAGGGTTTGTCTTGAGGCCTTTACCAACAGGGGGTCTCTGCTACTACATCGCAGGGGCCATAGCAGAGAAGAACTCCTTGGTTTAGATGTGCTCTTCACTGAAGATATGAAGATGAAAATGCAAGCAGATGGTGAGAATGTAAAATGCCCTGTTTGTGAACAAATATTTCCAACAAAAGAGAAGATGGAACTGCACTTTCCAACACACACAGAAAGTAGTTTTCCCTGTCATATTTGTGGCAAGATTCTGAGCAAGAGGAACACATTAGAATATCACCTTCGTACTCATACTGGGGAGAAGCCCTTTCAGTGCCGCTATTGCCCCAGTGCATTCCAGTCACGGATTGGACTCATAGTACATGAGCGTAAGCACACTGGCGAAAAACCATTCAAGTGTTCTGATTGTGACATGGCTTTCCGATGTCGAGCAACACTTAATCAACATAAGGTTATCCACTCTGAGGAGCGACCTTTCACTTGTGATCACTGTGGAAGAGGCTTCAGGCGACGTGACACACTGGAGACTCATGTCAGAACACATACTGATGAACGTCCCTACGCATGCTCCATCTGTGGGCGTGCATTCAGGCAAAAGGGAGACTGCAACAAGCATGAACGTACACATGGTAGAAAAGTAACATCTCTGCTGACTACAGAGGAGCCCTTCATTACATTCTCTTGCTCCATTTGTGGTCTTGAGGTGAATGAACAGGACGATTTGGACACTCATCTTCAGCTGCACCATGATTCTGAGGGAAAATCTACAGTGATCATGGTGAACACACGAGAAATGGAACATAAAAATCTAGATGATGTATCACAATAA
Protein Sequence: MDGSEWDEEHDWTGGYKVASDLCRICAEVASDIIHIFGVRGTELQLVDKIHMHLPIMEKSEYKTVAVKLKDSPKDEMMEILKTEDECVVKKQEYEEAEEEECVMDYAAGWEAIEYVCYYCNEGVIGKTNFVLHQMSVHQNEVISCPSCELVFELQEEFEEHFKSHMGEEEEEEEEEEDGEQSSKKVDRCGDEYGKKKKYQCATCGKVFSSEFKCLHHSCTNKDREEAYFECPMCDRKFLQGSTLSTHMKRHKGIFTCRVCLEAFTNRGSLLLHRRGHSREELLGLDVLFTEDMKMKMQADGENVKCPVCEQIFPTKEKMELHFPTHTESSFPCHICGKILSKRNTLEYHLRTHTGEKPFQCRYCPSAFQSRIGLIVHERKHTGEKPFKCSDCDMAFRCRATLNQHKVIHSEERPFTCDHCGRGFRRRDTLETHVRTHTDERPYACSICGRAFRQKGDCNKHERTHGRKVTSLLTTEEPFITFSCSICGLEVNEQDDLDTHLQLHHDSEGKSTVIMVNTREMEHKNLDDVSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -