Mvio037480.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060842.1:8241101-8252309[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.5e-05 0.0031 19.7 0.3 1 23 403 425 403 425 0.99 2 10 0.038 4.7 9.6 0.4 1 23 432 454 432 454 0.97 3 10 2.1e-05 0.0026 19.9 0.7 2 23 514 536 513 536 0.94 4 10 0.016 2 10.8 0.2 1 23 640 663 640 663 0.96 5 10 3.5e-05 0.0042 19.2 1.9 2 23 697 718 696 718 0.97 6 10 3.2e-06 0.00038 22.5 0.5 1 23 724 746 724 746 0.98 7 10 0.00097 0.12 14.7 3.8 1 19 752 770 752 775 0.91 8 10 1.9e-07 2.4e-05 26.3 0.7 1 23 781 803 781 803 0.99 9 10 1.3e-05 0.0016 20.6 2.8 1 23 809 831 809 831 0.99 10 10 2.8e-06 0.00034 22.7 0.9 1 23 837 859 837 859 0.97
Sequence Information
- Coding Sequence
- ATGGATGACTCTGGGAGACAACAAGAACTACTTAATGACGTGGATATGGTACCCCATTTGAGGACTGAAGTAGTAAAATTAAGTACTGCTTCCCTGAAAGGGGATGAGGATGGGGAACCCTCTCCTGAGTTGATAAGTACACAGTACATTAATATACACCGTGTTCCCGACACATTAACGAAAGGTTTAGTGGACTGTGGATCCCCAGCTCCTGCAACATTAATGAGTGGGGAGTTAATTCCTCATCACGTGGTTCATGGAGGGATGGTTGTAGACATGATGGTATCACAGCCTGCAACCTCAGCAGAGTTTACACAGCAGGGTCTGGATCGTGCCACTCTTCCACAGTACATAACTGACCAATATGATGCAGATGAAGACTTGCTTTCACATGATCTTACTGAAGAAGACAGGCGATTGGCAGTTCAATTGGTTCAGCTGGTACAgcaacaaaagcatcatcatgcTGTTGTGTCTTCTGAGTCCAATGTAATTGTGAGCCCAGGAGGATTACCGGGTTTAATTGCCACCACAGGACATCTTTCAACAAAAGTTCAAGTTCCTGTGTCCATTGGAGATCACCACATGACAACGATGCAGCCATTGTCACCAGTGGCAGGGGTACCTGTTGACAAGCCAGGTATGGCTGCCATGGTGACTAGTTATATCCAGGCTGTTGAGGAAGAGGCAGTTGTTGCAGCTACAAGTACCCACCAACAACTCCTGGACCATCCTGGGGatagaataatgaaaatgtatcagCCACAACACCAGTCTCAAGATCTAAGACTGCCACCAATAGCTCCACTTAAGAAGGTGCTATCAAGCCAGTCCATGACCATCAGAAGCCGCTATGTGAGGCCCCATCTACAGGAAGTTGTGCACAGACAGGAAGTAATTCAGCAggacaatgaaattaatttgggTGGTCGACTGCAGCACCATCCACAACAGACCTCAATTACGGATGACATGACTGGTGGTGTAAGTGATAAGGACCTGCATGAAGAATATGATGTGAAAATTGAAGGCCTGGAAGACGAGGACAGTGATGAGATAGCTCAAGATGATAATGACTCTGATTATGACATAGACAGTGATTTAAGGCCCTCTCGAAAGAGCCTACCACATAAAAAACGCATTCCTCGTAAGTTAAAAAACCTTAAGAAATCTGTGTCACCTTCAAGAAGCATTCATATTAAATCCTATAAGTGTATGAAATGTGGCGAACAATTTGCAAACCAATCTGCATTTGCTGCACATCGTCTGACCCATAACTCAAGCAAAAAGATGTTCAACTGTGAACTTTGTGGTAAAGGAATTGCAAATCAGCTTAAATTCTTTGAACATTTGAAATCTCATTATGAACCTATGACCCCAGCAGTAGCACTAGACCCTGTGACAATAGTAAAACCAaacacaaacaaagaaaaaaccttAGTTGTGTGTAGTGATGGTGAGTTGAAAGACACTGCAGAAAAATCTCAGCCACTCGTGCTTTCAGTAGGTCCAACAATTGGAGCAATTCCACCACCATTAACTTGTGATCAGTGTGGTAAAACTTTCCGTCGTCAGAAGGCTTTCGAAACACATGTTAATTTGGTTCATCCTAAACAAGAAGAAATTGAGGAGTTCAGTGAGCCAGAAGACTTAATGGAAGGGATTAGGGGTGTTGTAGATGTTGGTAGTGCTGACACTGGGGATGAGGCAGATATGGATTGTTTAACCTCTCCATCAGTGGTCAGGGTTTTGAAGAACAACAACGACAAAGATTGGTATAGAGAAGAGGATCTGCATGCTGCGGAGGTGGACCTTCAGGAGATtgaacaacagcagcagcaacaacagcaccATCACAACAATCACCATCATCAACAGCATCTCCATCACCACCTGCATCATCTGGATGATTCTGCGCATATATGTGAACTCTGTGGTGATATCTATGAAAGCAAGGCCCAATTAGAGCAGCATGTCCAGACAGATCATCTGGACTTTGCCCCAGACCCTGGAGGCAGGCAGGATGTTGTTGTATCTCCCAAAAGACGCCTGCATGGAAAGAAATCTCGACGTGCAGGATTGCATCTCACATGTCCTCAGTGTGGGCGCATGTTCAACCACCGCAATTCACTGGTCTATCATCTTCGTAGCCATTCAGGGGAGAGACCCCATCAATGTGAGGTCTGTGGGAAGTCTTTCTTTGCTGCCAGCGCACTCAAGGTTCACATGAGACTGCATTCGGGTGATAAGCCTTACAAATGTGAGTTTTGTGGTCGTCATTTTCGCCAGTGGGGTGATCTCAAGTATCATTGTATCTCTATACATTCTGAGGAGAAGAACTATCAATGTGAATACTGTGGCAAGGACTTTGCACGCAAATATTCTCTCATTGTGCATCGAAGAATCCACACTGGGGAAAAGAATTACAAATGTGAATTCTGCACAAAGAGCTTCCGTGCCTCATCATATCTACAGAATCATCGCAGAATACACACAGGAGAGAAACCACATCCCTGTGAGGTTTGTGGGAAGCCATTCAGGGTGCGTTCCGATATGAAACGCCATCTCAACACCCACAACCGCCATCGTATTGTTGGCGGAAGCAGCTCAAGTTCTGCCATCGAAGTAGCGCACAGTATTCTGACTACTCAGCAACCTAAGCTGGAGGAACATGATTCTGAACTGGAGGCAAGCCTGCCATCTACTCACACCATCACAGTAGAACATCAAGCCATCTCAGAGCTCAATCCTGTCACTGAGATCACCATTCAGCCAGAAAATGGTGCTCCAGAAACAATTCTACCTGATGAAAGTTTGGGTGATACTGTCGTAGATCAGCAGCCAATAAATTTGAACATTGCTGTTCCTGCTGTGGCAACACGGCAGGCACATGCTCACCAACTTGCCACTAGTGCTCAAGCTGTGTCAGATGACGTGATTCCTTATTCAAGGGATCCACTGGAAACTGTTAGGGATGGAAACACGCTCTTAGTATGGCCCATTTACATGGCATAG
- Protein Sequence
- MDDSGRQQELLNDVDMVPHLRTEVVKLSTASLKGDEDGEPSPELISTQYINIHRVPDTLTKGLVDCGSPAPATLMSGELIPHHVVHGGMVVDMMVSQPATSAEFTQQGLDRATLPQYITDQYDADEDLLSHDLTEEDRRLAVQLVQLVQQQKHHHAVVSSESNVIVSPGGLPGLIATTGHLSTKVQVPVSIGDHHMTTMQPLSPVAGVPVDKPGMAAMVTSYIQAVEEEAVVAATSTHQQLLDHPGDRIMKMYQPQHQSQDLRLPPIAPLKKVLSSQSMTIRSRYVRPHLQEVVHRQEVIQQDNEINLGGRLQHHPQQTSITDDMTGGVSDKDLHEEYDVKIEGLEDEDSDEIAQDDNDSDYDIDSDLRPSRKSLPHKKRIPRKLKNLKKSVSPSRSIHIKSYKCMKCGEQFANQSAFAAHRLTHNSSKKMFNCELCGKGIANQLKFFEHLKSHYEPMTPAVALDPVTIVKPNTNKEKTLVVCSDGELKDTAEKSQPLVLSVGPTIGAIPPPLTCDQCGKTFRRQKAFETHVNLVHPKQEEIEEFSEPEDLMEGIRGVVDVGSADTGDEADMDCLTSPSVVRVLKNNNDKDWYREEDLHAAEVDLQEIEQQQQQQQHHHNNHHHQQHLHHHLHHLDDSAHICELCGDIYESKAQLEQHVQTDHLDFAPDPGGRQDVVVSPKRRLHGKKSRRAGLHLTCPQCGRMFNHRNSLVYHLRSHSGERPHQCEVCGKSFFAASALKVHMRLHSGDKPYKCEFCGRHFRQWGDLKYHCISIHSEEKNYQCEYCGKDFARKYSLIVHRRIHTGEKNYKCEFCTKSFRASSYLQNHRRIHTGEKPHPCEVCGKPFRVRSDMKRHLNTHNRHRIVGGSSSSSAIEVAHSILTTQQPKLEEHDSELEASLPSTHTITVEHQAISELNPVTEITIQPENGAPETILPDESLGDTVVDQQPINLNIAVPAVATRQAHAHQLATSAQAVSDDVIPYSRDPLETVRDGNTLLVWPIYMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00435013;
- 90% Identity
- iTF_00435013;
- 80% Identity
- -