Mvio042083.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- ZNF341
- Assembly
- GCA_030762175.1
- Location
- CM060843.1:57452339-57517249[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00095 0.12 14.7 3.2 1 23 56 78 56 78 0.97 2 13 0.0014 0.17 14.2 4.5 2 23 311 332 310 332 0.97 3 13 1.5e-07 1.9e-05 26.6 0.5 1 23 338 360 338 360 0.99 4 13 0.0005 0.061 15.6 2.0 1 23 400 422 400 422 0.98 5 13 0.71 87 5.7 2.1 5 23 434 452 428 452 0.87 6 13 0.044 5.3 9.5 6.6 1 23 458 480 458 480 0.96 7 13 0.0078 0.94 11.8 1.6 1 22 498 519 498 522 0.91 8 13 0.00029 0.035 16.3 1.0 1 23 524 546 524 546 0.98 9 13 3e-06 0.00036 22.6 1.3 1 23 552 574 552 574 0.98 10 13 0.0008 0.097 14.9 1.1 1 23 580 602 580 602 0.96 11 13 0.00061 0.074 15.3 0.9 1 23 608 635 608 635 0.97 12 13 6.9e-06 0.00084 21.4 4.0 2 23 642 663 641 664 0.95 13 13 0.012 1.5 11.2 0.6 1 21 669 689 669 690 0.91
Sequence Information
- Coding Sequence
- ATGGCTCATTTGCTGTTTGACAGCTTAACCgGAGTAACGGTGGACAATCAAACGGCCCTGACAGTCCAATCTTTGTTAGACCCACTAAACTTGCCAAGTGAAAGTTTAGCTGACTCTTCAGTTTCACGACCAGCAGATGCTATTGCTTTAGATGATGAAGATGTATTCCAGTGTGGAAAATGCAAGAAACAATTTACATCTTTCTCATTGTTCATGGCTCACAAAAAGGAGCATGTGCCTGgaagttcTACAGAAAAAATGTCACAAATTAATGAAGAGAGTGGTCTTGCTCTCACATTGGAAAGAGAATTTCAGCAACAAGATGGAGAAGGAAACTTTGCCCAATTGGAGGTACATGCACTTGATGGTGACTGCTGTACTGAGGTTGGGCAGCCCATCATGCTCAGTGAGGCAGACATACTCAGTCTGGGCATTGACAATGGTTCTCTCACAATCACTACAAGTTCACAGGACTTTCCATCATTGTCAAGTGTGATACAAAGTGGAACATACCTCACTTCTCCTGTAACTTCATCCACACCATCCCTGAAGACTCAGTCTAGTTCAGCAACAGATAACTTCAATGTGACTGCACTGGAGGGGCAGCCCATCATTCTTGAAGCTTCAGATCTGTCTGACACTACCTTTATATCACCAGACATGGATCAACCGCATGATACCATGAACAATGGAGTCAGTGGAGGGAAGAGAATGTTAGAATTTGGAAACTCTGAAACAAGCTTGGAATTGCTGGATCCGGAAGCTGTGGAATTTGCTACAGAGCAGGACTTGCAGCAGACATTGCAGCCTACCAGTGATCCAGGCAATGAGAACATTATGGTTGATAATGTTCAACAAAACTCTGCTAATGTTCCTTCCTTAGAGACTGCACATGATAATCAACGACCTGCCTTAAAACCGTTAAAGCTTAAATGCTGCTTCTGTAGCAAAATGTTTGCAAAGAATTTTGATTTGCAACAGCATTTAAGAAGTCATACAGGAGAAAAACCATTCCAGTGTGTGGTGTGTGGCCGTGCATTCTCACAGAAGTCCAATGTAAAGAAACATATGGCCACGCACAAGGTGTGGCCTAAAGATATGTCCTCCACTCTTCCCAAGGAACCTCTCCAACCAGTCACAGATAATTCAGGATTAAATAATGGTACAAATGATGTAGACATGATATTGGATAGAGCTTATGTGTGTCAGTACTGTGATTCCCGGTTTCAATCATACTATGGACTGAAAACGCACATGAAACTTCATTCCAATCAAAAGGTGTACAAATGCATCCAAAAGAACTGCCATCAGACATTTTCTGACTTGGATGCATTTGTTCTTCATTCAAGATTTCATGCAAGTGAGGTGCTCTATCACTGCCATGTGTGCAACAAACAGTTCCGTGACCTGAGAGACCTTGGCCTCCATCAGTACCATCACACTGGAATTCATAAAAAGACTGCATGCACTTCAAAAACAGTTTCTCAGCATTTCCAGTGCCCAAAATGCAAAAGCAGATTTGCAACTCTTGAGACATTGGACCACCACATATCATCCACAAGCCACAGCTATCCATGTCCACGCTGTGGTAAAGTTTTCATATGTGAGAGATACCTGCGCAGACATCTGGCAACACATGGAGCATCGTCGTCCTTCATGTGTCAACAGTGTGGCAAGGGCTTCCGCACAGAACAGTACCTTAATACTCATATGCTCACACATAGTACCCTTAAACCTTATGCTTGTCAAcattGTTCAGCAGCGTTTAATCGTAAAGATAAATTAGTGAGACATTCTCTCATTCATCAATCTGTAAAGAGGTTCAAGTGCCCATTCCGCTCATATCTGGGTTGTCTGAAAGAGTTCAACAGACAAGATAAGCTAAAGCTCCATATTCTGACCCACAATTCAACAACGCCTCTGCAATGCAAAATCTGCAACAAAACATTCCAGCGACAGTCGCTACTTCAGCAGCATGAGAAAACGCATCACCAAGGAACTCCTTATCTTTGCCATCAATGTGGCATgGCTTTCAAGAAGAAAATATCACTAGGAGCACACGTGTGTATTTTTCAAGAGAAATCATCTGGTCGGGAGGAAGCCAATAAAGTTAAACGAGCAAGATTACAGCATCGTTCTGCTCGCCGTAGTGTAAAACGAGCATGGGCAACACGgaagaaaaaacaaagttttgcaAAAAGTGGAAAATCCATTCCTCCAGAACCTCCAGACAATGTACCTACCATTGAGATAATAGTGATGCCAGTACCAGTGTCACCTGGGTCTGCTTCTGTGGCAGCTAATGAACAGGGTAGTCTGTACCATGTTGTTTTTCCTCCTGCAGAGATTTCTATAGAGAGCAACACAATGTTGCAGTCACAGGACCAACAACAAGATCAGCAGTTCTTGCAGCACAATCAAGAAGGCAGATATGACCAGGAAGTTCCTGTAGCACCCACATTGATATGA
- Protein Sequence
- MAHLLFDSLTGVTVDNQTALTVQSLLDPLNLPSESLADSSVSRPADAIALDDEDVFQCGKCKKQFTSFSLFMAHKKEHVPGSSTEKMSQINEESGLALTLEREFQQQDGEGNFAQLEVHALDGDCCTEVGQPIMLSEADILSLGIDNGSLTITTSSQDFPSLSSVIQSGTYLTSPVTSSTPSLKTQSSSATDNFNVTALEGQPIILEASDLSDTTFISPDMDQPHDTMNNGVSGGKRMLEFGNSETSLELLDPEAVEFATEQDLQQTLQPTSDPGNENIMVDNVQQNSANVPSLETAHDNQRPALKPLKLKCCFCSKMFAKNFDLQQHLRSHTGEKPFQCVVCGRAFSQKSNVKKHMATHKVWPKDMSSTLPKEPLQPVTDNSGLNNGTNDVDMILDRAYVCQYCDSRFQSYYGLKTHMKLHSNQKVYKCIQKNCHQTFSDLDAFVLHSRFHASEVLYHCHVCNKQFRDLRDLGLHQYHHTGIHKKTACTSKTVSQHFQCPKCKSRFATLETLDHHISSTSHSYPCPRCGKVFICERYLRRHLATHGASSSFMCQQCGKGFRTEQYLNTHMLTHSTLKPYACQHCSAAFNRKDKLVRHSLIHQSVKRFKCPFRSYLGCLKEFNRQDKLKLHILTHNSTTPLQCKICNKTFQRQSLLQQHEKTHHQGTPYLCHQCGMAFKKKISLGAHVCIFQEKSSGREEANKVKRARLQHRSARRSVKRAWATRKKKQSFAKSGKSIPPEPPDNVPTIEIIVMPVPVSPGSASVAANEQGSLYHVVFPPAEISIESNTMLQSQDQQQDQQFLQHNQEGRYDQEVPVAPTLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -