Basic Information

Insect: Metallyticus violacea
Gene Symbol: Prdm9
Assembly: GCA_030762175.1
Location: CM060838.1:25628048-25644377[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.63 76 5.8 0.9 1 15 185 199 185 202 0.88

2 14 0.00022 0.027 16.7 2.8 1 23 213 235 213 235 0.98

3 14 9.4e-05 0.011 17.9 1.6 1 23 241 263 241 263 0.98

4 14 2.1 2.6e+02 4.2 0.2 7 23 275 291 269 291 0.86

5 14 0.00068 0.083 15.2 1.2 1 23 297 319 297 319 0.98

6 14 9.5e-05 0.012 17.9 1.6 1 23 325 347 325 347 0.98

7 14 0.00015 0.018 17.2 3.7 1 23 353 375 353 375 0.98

8 14 0.00028 0.034 16.4 1.4 1 23 381 403 381 403 0.98

9 14 0.0002 0.024 16.8 1.2 1 23 409 431 409 431 0.98

10 14 0.00028 0.034 16.4 1.4 1 23 437 459 437 459 0.98

11 14 0.00025 0.031 16.5 1.2 1 23 465 487 465 487 0.98

12 14 9.4e-05 0.011 17.9 1.6 1 23 493 515 493 515 0.98

13 14 0.00022 0.027 16.7 2.8 1 23 521 543 521 543 0.98

14 14 9.4e-05 0.011 17.9 1.6 1 23 549 571 549 571 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.63	76	5.8	0.9	1	15	185	199	185	202	0.88
2	14	0.00022	0.027	16.7	2.8	1	23	213	235	213	235	0.98
3	14	9.4e-05	0.011	17.9	1.6	1	23	241	263	241	263	0.98
4	14	2.1	2.6e+02	4.2	0.2	7	23	275	291	269	291	0.86
5	14	0.00068	0.083	15.2	1.2	1	23	297	319	297	319	0.98
6	14	9.5e-05	0.012	17.9	1.6	1	23	325	347	325	347	0.98
7	14	0.00015	0.018	17.2	3.7	1	23	353	375	353	375	0.98
8	14	0.00028	0.034	16.4	1.4	1	23	381	403	381	403	0.98
9	14	0.0002	0.024	16.8	1.2	1	23	409	431	409	431	0.98
10	14	0.00028	0.034	16.4	1.4	1	23	437	459	437	459	0.98
11	14	0.00025	0.031	16.5	1.2	1	23	465	487	465	487	0.98
12	14	9.4e-05	0.011	17.9	1.6	1	23	493	515	493	515	0.98
13	14	0.00022	0.027	16.7	2.8	1	23	521	543	521	543	0.98
14	14	9.4e-05	0.011	17.9	1.6	1	23	549	571	549	571	0.98

Sequence Information

Coding Sequence: ATGGTAATCCTGATATACAGTCTTCCAAACTCTTTGAATGGGGGATTCCACCAGCGTCCAGCTGATCTATCTGTACCTCTGAATTCAAATGATCCAATGCGTGCAGATAAAACGCTACCAAATATGCTAATTATTGCCCAGTCTTCTATTCCAAATGCTGGCAAAGGAGTATGGACTAAGGAACCACTTGCAAAGGGCACACGATTTGGTCCATATGAAGGAACAATAAGTGATCCCTCAAACAATAATGGATATTGCTGGCAGaTACGTCAAAATAAACGTCCTTTACATTCCATAGATGCTTACCCCAAGGAACTTGCAAACTGGATGCGATATGTCAACTGTGCTCGTCATATAGAGGAACAGAATCTGATTGCATttcaatataaaggaaaaatatattatcgAACTCTGTGTGATATAGCAGCCCAAATAGAACTTCTGGTATGGTATGGAGAAGAATTTGGGCGGGAACTAGGAATAAACCTAACCACTTTCCACAAACCTCACCATAAAGGCTTAAATGGTCAAATACATACTGGTGAAAAATCATACTCGTGCACCATTTGTGGCTATCAGTGCAGAAATTCTGGAGATATCACAACAAACAAGATGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAGTCGAGTTAGAAGTCTCACAAGACACAAGAGGATACATACTGGAGAAAAACCATACTCATGCGACATTTGTGGCTATCAGTGCAGTCGAGTTGGAAATCTCACAACACACAAGAGGATACATACTGGAGAAAAACTATACTCATGTGACATTTTTGGCTATCAGTGCAGTCGAGTTGGAAATCTCACAACACACAAGAGGATACATATTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGTAGTCAAGTTGGATATCTCACAGAACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAATCAAGTTGGAAATCTCACAAGACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAGTCGAGTTGGACATCTCACAAGACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAATCAAGTTGGAAATCTCACAACACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAGTCGAGTTGGAGATCTCACAACACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAATCAAGTTGGAAATCTTACAACACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAATCGAGTTGGAAATCTCACAGAACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAGTCGAGTTGGAAATCTCACAACACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAGTCGAGTTAGAAGTCTCACAAGACACAAGAGGATACATACTGCAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAGTCGAGTTGGAAATCTCACAACACACAAGAGAATACATACTGGAGAAAAACCATACTCATGCGACATTTGTGGCTATCATGCAGTCGAGTTGGAAGTCTCACAAGATACAAGAGGATACATACTGCAGAAAAACCATACTCATGCGACATTTGTGGCTATCATTGCAGTTAAGTTGGACATCTCACAGAACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAGTCAAGTTGGAAATCTCACAACACACAAGAGGATACATACTGCAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAGTCGAGTTGGAGATCTCACAACACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAATCAAGTTGGAAATCTTACAACACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAATCGAGTTGGAAATCTCACAGAACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAGTCGAGTTGGAAATCTCACAAGACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAGTCGAGTTAGAAGTCTCACAAGACACAAGAGGATACATACTGCAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAGTCGAGTTGGAAATCTCACAACACACAAGAGAATACATACTGGAGAAAAACCATACTCATGCGACATTTGTGGCTATCAGTGCAGTCAAGTTGGAAATCTCACAACACACAAGAGGATACATACTGGAGAAAAACCATACTCATGCAACATTTGTGTCTAACAGTGCAGTCGAGTTGGAAGTCTCACAAGATACAAGAGGATACATACTGCAGAAAAACCATACTCATGCGACATTTGTGGCTATCATTGCAGTTAAGTTGGACATCTCACAGAACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCATTGCAGTTAAGTTGGACATCTCACAGAACACAAGAGGATACATACTGGAGAAAAACCATACTCATGCGACATTTGTGGCTATCAGTGCAGTCAAGTTGGAAATCTCACAAGACACAAGAGGATACATACTGGAGAAAAACCATACTCATGTGACATTTGTGGCTATCAGTGCAGTCGAGTTGGAAATCTCACAAGACACAAGAGGATACATACTGGAGAAAAACCATACTCATGCGACATTTGTGTCTAACAGTGCAGTCAAGCTGGAAATCTCACAACACACAAGAGGATACATACTAGAGAAAAACCATACTAATGCGACATTTGTGTCTAACAGTGCAGTCGAGTTGGAAGTCTCACAAGACACAAGAGGATACATACTGCAGAAAAACCATACTCATGCAACATTTGTGGCTATCATTGCAGTTAAGTTGGACATCTCACAGAACACAAGAGGATACATACTGGAGAAAAACCATACTCATGCGACATTTGTGGCTATCAGTGCAGTCAAGTTGGAAATCTCACAACACACAAGAGGATACATACAGGAGAAAAACCATACTCATTATAACCCAGCTGGACATCTCACAACACACAAGCTGGTAAGACCCATACACATCCACCTTTTGCGGTATCAGCATAATAAAGCTGAACATCTTTTACTACCCAAGAGGATACATGCAATAGTATAA
Protein Sequence: MVILIYSLPNSLNGGFHQRPADLSVPLNSNDPMRADKTLPNMLIIAQSSIPNAGKGVWTKEPLAKGTRFGPYEGTISDPSNNNGYCWQIRQNKRPLHSIDAYPKELANWMRYVNCARHIEEQNLIAFQYKGKIYYRTLCDIAAQIELLVWYGEEFGRELGINLTTFHKPHHKGLNGQIHTGEKSYSCTICGYQCRNSGDITTNKMIHTGEKPYSCDICGYQCSRVRSLTRHKRIHTGEKPYSCDICGYQCSRVGNLTTHKRIHTGEKLYSCDIFGYQCSRVGNLTTHKRIHIGEKPYSCDICGYQCSQVGYLTEHKRIHTGEKPYSCDICGYQCNQVGNLTRHKRIHTGEKPYSCDICGYQCSRVGHLTRHKRIHTGEKPYSCDICGYQCNQVGNLTTHKRIHTGEKPYSCDICGYQCSRVGDLTTHKRIHTGEKPYSCDICGYQCNQVGNLTTHKRIHTGEKPYSCDICGYQCNRVGNLTEHKRIHTGEKPYSCDICGYQCSRVGNLTTHKRIHTGEKPYSCDICGYQCSRVRSLTRHKRIHTAEKPYSCDICGYQCSRVGNLTTHKRIHTGEKPYSCDICGYHAVELEVSQDTRGYILQKNHTHATFVAIIAVKLDISQNTRGYILEKNHTHVTFVAISAVKLEISQHTRGYILQKNHTHVTFVAISAVELEISQHTRGYILEKNHTHVTFVAISAIKLEILQHTRGYILEKNHTHVTFVAISAIELEISQNTRGYILEKNHTHVTFVAISAVELEISQDTRGYILEKNHTHVTFVAISAVELEVSQDTRGYILQKNHTHVTFVAISAVELEISQHTREYILEKNHTHATFVAISAVKLEISQHTRGYILEKNHTHATFVSNSAVELEVSQDTRGYILQKNHTHATFVAIIAVKLDISQNTRGYILEKNHTHVTFVAIIAVKLDISQNTRGYILEKNHTHATFVAISAVKLEISQDTRGYILEKNHTHVTFVAISAVELEISQDTRGYILEKNHTHATFVSNSAVKLEISQHTRGYILEKNHTNATFVSNSAVELEVSQDTRGYILQKNHTHATFVAIIAVKLDISQNTRGYILEKNHTHATFVAISAVKLEISQHTRGYIQEKNHTHYNPAGHLTTHKLVRPIHIHLLRYQHNKAEHLLLPKRIHAIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -