Mvio016165.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060834.1:3985298-4093664[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.075 9.1 8.7 0.1 2 23 72 94 71 94 0.93 2 14 1.7e-05 0.002 20.2 0.1 2 23 101 123 100 123 0.94 3 14 3.5 4.3e+02 3.5 0.4 9 23 130 145 128 145 0.93 4 14 0.0015 0.19 14.0 0.2 2 23 191 212 190 212 0.95 5 14 1.6 1.9e+02 4.6 0.2 1 19 220 238 220 240 0.93 6 14 0.00021 0.026 16.7 1.1 2 23 529 550 528 550 0.96 7 14 0.002 0.25 13.7 0.3 1 20 556 575 556 578 0.92 8 14 0.0076 0.93 11.8 5.4 1 23 584 606 584 606 0.96 9 14 1.6e-05 0.002 20.3 0.3 2 23 613 634 613 634 0.96 10 14 1.4e-06 0.00017 23.6 1.3 1 23 640 662 640 662 0.99 11 14 0.00048 0.058 15.6 0.5 1 23 676 698 676 698 0.97 12 14 0.0002 0.024 16.9 6.6 2 23 705 726 704 726 0.96 13 14 1.7e-05 0.0021 20.2 1.1 2 23 733 754 733 754 0.96 14 14 2.6e-05 0.0032 19.6 5.0 1 23 760 782 760 782 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAGCCTAGAGAATCTGAAATGGAGATGGTATTGAACCCAGAGTTTGTCAAGGTTGACATGGAAACTGACAGTGATGATGATCCAGTATTCCCTGATGGAGATAATTCCAATGATGATGACATGGAATGCTGGTTACCTAACCGACAATATCAGCAACAGCACCGCCGTAATAGTCGGGGGACCAGGACTCGCCCATGTGGCAAGTTAAAATGCAGCCTTTGTGGCCGGGAAGACTTCCGTCGTCCTATTGATCTAGCTCGCCATACCACTGCTCATTCCTGGGTTCGGAGCCAGGTCTGCACAATCTGTGGCAAGGGTTATATTTACTGGAAGAGTCTTAAGAGACACATGGCCCAAGGGCATCCCACTGTAAACAAGGCGAAGTTTAGCCGAGAAGCAAAGTTACGAAACCACTTCCAGACTGTCCATCAATTTTCAATACTAGATGATGCAGCTATTTCAAAAAACCATCTCCGACAACGTAGGAAGATGTCTGATTCCCAGCAGGAAACATCCTCAGGTACAAATAATGATCATCGCACACCTTCACAAAGGAGACAACTGGTGTGTGAACGATGTGGCCTGTTTTTTGCACGCACATCCCAGTTGCTTCAGCATCGTGTCATACACCAGGAAGGTGGTGCTGCAAGCTTCACCTGTGGCAAGTGTGGTGGGGATTTACCTAGTCTTGCATCGCTAAGGGCTCACTTCTGTCCCTCTCAACAAGCACAGCTTGATCAGCTCTCCACAAATATTACTATTATCCccattaacaacaataacaaaagacAACATATCCATGTAAACCAGGCCTTAACAGTAGAAACCTTAAAAGTGGAGTGTGGCGGGATCCCTTCTCGCCTTGCTTCTGAGCTAGAAGTGACTCGACTGCACCACATCTCAACTTTGCAGTCAGCATCCAAGCCATCCATTGCACCAAATAATTTGAAACCTCGAGATGTGCGTCGTCAGGAATTGGAGGTAACCTGTTTATCTGGAGCAACCCATCCCATGGATCAAGAACAACAAAAAGCAAAGGCAGAAGCAATGCCTCCTTTACAGCCAAAAAAGATGCAAGCACAACAGTTACTCAAACACCAAACTGAGACACCTCGCATCTTAGTGCACAAAGAACTAGAGCTGAGGTACCTGCCAGAGCTGCACTCTCCCAAGAAAACTGCAATAAAGCGAGAGCTAGAGGTAACTTTAGTAGAAGCCCACCAAAGACCATTGCTGAAAGAAACATCAGATGTACAGGGACTGGATTTAACAGATGCTCCATGCAAGTACACATTCGCCGAGCCTTCTGCTTTTCAGAATGATGCACTGTGCGCAATCTTTGTAACCCAACCGCTGATGGGGAAAGGGGTGAAAGTTCCCTTGCTCAATAACAGTGCTTCTGAAATCTCTCGAGTGATGATTCTGCAATTCCCCTTTACAAGGTTATCTACGGCCACATTTGACTTCTTGGAGATAGTTAATTGGGAAGAGCAGAAGGTATACTCACAAGTAAGGGAAGATCTGCCTTGTTATGACTTGCAAGCAGATTCCAGCACCATTGAACAGAACCGGAGCCTTAGTTGCAAGATATGCCAGAAGAGTTTTGTTACCACTGAGCAGTTAGGAAGACATTTCAGCACTCACAAAGTAAAGAAACATTACAGATGCAGCACGTGTGGTGAGGAATTTCCGCGAGTTCGTCTGTTAAAGGCTCATAAACCAACGCATGTAGAGCTGTTGCATCATATTTGTAAGACTTGTGGCAAACGTTTTGGGTATCTTCACCTTCTGAAGAGCCATTCCAAGAGCCATATACGTGGCAAACCAAATGTGTGTGACACATGTGGCAAATTTTTTGCCTCTGTGAGTAATCTAAATAAACATCTTCTGCTGCATTATGGCGAACGTAAATATGTGTGTAATGTCTGTGGCAAGAAATTTGTCCTTCAGTATGATTTAAAGAAACACAGTCGTACACATATGAAAGGGCAGGACAGTGAGCCGAAGAAGGAGAGAAGGTATGTGTGTCTCACTTGTGGGCAGACATTTCCTCGCAAGCAGACTATGAAGTTGCACCGGGCTGTACATGCTCacgaaaaacatttaatttgtgaaACATGTGGAAAGAGATTCCGTCATCTCCACCATCTGAAATCACATGCCAGGAGCCATGTGCGAACAAAACCAAATTCCTGTGATATCTGCTTCAAGTTCTTCTCATCAGTCAGCAACTTGAACAAGCACATGCTGCTGCACTCTGGAGAGAAACCTCATGCATGTGAAGAGTGTGGCAAACGCTTTGTGCATTCATGTGATCTCAAGAAGCATGTGCGCATTCATGAGAGAGAGACCTTTTGCATGCAGAAAATGTGGTGA
- Protein Sequence
- MEQPRESEMEMVLNPEFVKVDMETDSDDDPVFPDGDNSNDDDMECWLPNRQYQQQHRRNSRGTRTRPCGKLKCSLCGREDFRRPIDLARHTTAHSWVRSQVCTICGKGYIYWKSLKRHMAQGHPTVNKAKFSREAKLRNHFQTVHQFSILDDAAISKNHLRQRRKMSDSQQETSSGTNNDHRTPSQRRQLVCERCGLFFARTSQLLQHRVIHQEGGAASFTCGKCGGDLPSLASLRAHFCPSQQAQLDQLSTNITIIPINNNNKRQHIHVNQALTVETLKVECGGIPSRLASELEVTRLHHISTLQSASKPSIAPNNLKPRDVRRQELEVTCLSGATHPMDQEQQKAKAEAMPPLQPKKMQAQQLLKHQTETPRILVHKELELRYLPELHSPKKTAIKRELEVTLVEAHQRPLLKETSDVQGLDLTDAPCKYTFAEPSAFQNDALCAIFVTQPLMGKGVKVPLLNNSASEISRVMILQFPFTRLSTATFDFLEIVNWEEQKVYSQVREDLPCYDLQADSSTIEQNRSLSCKICQKSFVTTEQLGRHFSTHKVKKHYRCSTCGEEFPRVRLLKAHKPTHVELLHHICKTCGKRFGYLHLLKSHSKSHIRGKPNVCDTCGKFFASVSNLNKHLLLHYGERKYVCNVCGKKFVLQYDLKKHSRTHMKGQDSEPKKERRYVCLTCGQTFPRKQTMKLHRAVHAHEKHLICETCGKRFRHLHHLKSHARSHVRTKPNSCDICFKFFSSVSNLNKHMLLHSGEKPHACEECGKRFVHSCDLKKHVRIHERETFCMQKMW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -