Mvio031719.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060839.1:89675838-89693369[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00017 0.02 17.1 1.2 1 23 74 96 74 96 0.98 2 17 0.021 2.6 10.5 3.8 1 23 103 125 103 125 0.97 3 17 0.00031 0.037 16.2 1.4 3 23 133 153 131 153 0.97 4 17 0.0034 0.41 13.0 2.4 1 23 163 185 163 185 0.95 5 17 0.00021 0.026 16.8 6.4 1 23 191 213 191 213 0.98 6 17 1e-05 0.0012 20.9 1.9 1 23 239 261 239 261 0.98 7 17 0.0024 0.3 13.4 2.8 1 23 268 290 268 290 0.96 8 17 1.4e-05 0.0017 20.4 1.8 1 23 296 318 296 318 0.98 9 17 0.012 1.5 11.2 5.7 1 23 359 381 359 381 0.96 10 17 1.4e-06 0.00017 23.6 0.6 1 23 387 409 387 409 0.97 11 17 0.0024 0.29 13.4 0.7 1 23 435 457 435 457 0.98 12 17 0.0016 0.2 14.0 1.5 2 23 465 486 464 486 0.96 13 17 0.027 3.3 10.1 4.9 1 23 489 511 489 511 0.96 14 17 0.007 0.85 12.0 3.0 1 23 514 536 514 536 0.96 15 17 7.3e-05 0.0089 18.2 1.8 3 23 544 564 542 564 0.96 16 17 5.2e-05 0.0063 18.7 0.7 1 23 570 592 570 592 0.97 17 17 1.5 1.9e+02 4.6 1.7 2 23 599 619 598 620 0.92
Sequence Information
- Coding Sequence
- ATGCATGACAGTCATTTGGATCCATTTCATGAATccactttggaaataaaaacagaactgGAAGATGAAGTTTTGGGTCTGGCTTCACAAATCAAACCAAAGGATATATATTTGAGCAATGCAGAAGACAAAGATGCAGCCACAGAAGAAGTTACAGATGCCAGTAAACAAAAGAATGTGTCATCTCCAGCGAAAGCACATATGGAAGGAGAAACGGACTACAAATGTGACATGTGTGGAAGATATCTCACTACAATTAGTTCCTTTAAGCGCCATCTGATTTCACATACAAGAACTAAAATTGTGCACCAGTGTGACACCTGTGGGAGGGTATGTCGTGACAGGTACATACTAAAGGTACACAAACTATCCCATTCAGATGAAAAACCATATGGTTGTGACAAGTGCAAAAAACAATTTAAGAAGAAAGCATCCTTTAAGGCACATGTAGCTACTCATTGTGAAGTTTTGAAGAAAGCTCAAGGGCATAGCTGTGATGTCTGTGGAAAAGTCTTTTATTATACATACCGTCTCAAGGAACATAAGGTATCACATTCTGAGGAGAAGCCCTATTGTTGTGATATGTGTGAAAAACGATTCAAGCATAGATACACTTTGAGTACACATATGCTTGTCCACTCTGGTCTGATGTCACATTTACAAGCCACAAGACAGAAAGTTTCAGCAAAGCCATGCATACTGGGAGAAACAGAATTCAAGTGTAACATATGtgataaatttttttattcaatatcttCCTTTAAGGAGCACATGATTTCTCACACAAAGactgaaaaagtatttatttgtgaGATCTGTGGACTAATTTGCCATAGCAAGTACTCCCTTACTAGACACAAAATGGCTCACTCAGAAGAGAAACCATATTCTTGTGAAGTATGTAAGAAAAATTTCAAACGCAAGTTTTCCATCAAAGCACATATGGCTACACACACTTTTGATACACCACACCAGGAAACAAATTGTAACAATAGAGCAAAACCGCATGTGTCAGAAGAAACAGAAGGTAATTTAAAACACCATTTATATTGTCACAGAAAGAGTACAAATTTACATTGTTGTGAGATCTGTGGAAATGAATTTCATGACAGCTACATGCTCAAGAAACACAGAGCATCACACTCTGAGAAGAAATCATATGTTTGTGACATATGTGGGAAACAGTTTAAGCACAAGGTCACCTTGAAGGCACATGTAATTATTCACTgtaatgaaaaatcaaatgccTGTACGATGAACCAAAAAATTCCATCAAATCTGGACATACcagaagaaacaatattcaaatgtGACAAATGTGATGAGAATGTGTTTACAAAAGATGGCTTCGAACAGCATCTGTTATCTCACACGAACACTACTAGTACTGTTAGCTGTGAAGTGTGTGGGAAAGTGTGTTTCAATGGCTACATGCTTAAGAGGCACAAAATGTCCCACAAAGAACATAAATGTGATATCTGCAGGAAAGTGTTTCATAAAAGTTCCATACTAAGGAAGCATAAAGAGATCCACAAAAAACATAGCTGTGACATCTGTGGGAAGGTGTGTCTAGATAGATATAAACTTATGAAGCACATAACATTACACAAAGTAGACGAAACATTTGGTTGTAATGTTTGTGGGAAACAATTTAAGAGGAAATGGTGTCTAAAGTCGCATATAGTGATCCACTCTGGAGAAAAACCATTTGCATGTGAGGTCTGTCAGAAACGTTTTTCATTCACTTCTTCACTGTGGGCACATAAACTAACTCATACAGAAAGTGGTCGCATTAGGTGTAATGTATGTAACAAGGAAGTGGgtgcaaaatatttcaagacACACAAACAGATTCACCATATTACATCTGTTGCTTGCTAG
- Protein Sequence
- MHDSHLDPFHESTLEIKTELEDEVLGLASQIKPKDIYLSNAEDKDAATEEVTDASKQKNVSSPAKAHMEGETDYKCDMCGRYLTTISSFKRHLISHTRTKIVHQCDTCGRVCRDRYILKVHKLSHSDEKPYGCDKCKKQFKKKASFKAHVATHCEVLKKAQGHSCDVCGKVFYYTYRLKEHKVSHSEEKPYCCDMCEKRFKHRYTLSTHMLVHSGLMSHLQATRQKVSAKPCILGETEFKCNICDKFFYSISSFKEHMISHTKTEKVFICEICGLICHSKYSLTRHKMAHSEEKPYSCEVCKKNFKRKFSIKAHMATHTFDTPHQETNCNNRAKPHVSEETEGNLKHHLYCHRKSTNLHCCEICGNEFHDSYMLKKHRASHSEKKSYVCDICGKQFKHKVTLKAHVIIHCNEKSNACTMNQKIPSNLDIPEETIFKCDKCDENVFTKDGFEQHLLSHTNTTSTVSCEVCGKVCFNGYMLKRHKMSHKEHKCDICRKVFHKSSILRKHKEIHKKHSCDICGKVCLDRYKLMKHITLHKVDETFGCNVCGKQFKRKWCLKSHIVIHSGEKPFACEVCQKRFSFTSSLWAHKLTHTESGRIRCNVCNKEVGAKYFKTHKQIHHITSVAC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -