Mvio016543.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060834.1:16238360-16244379[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00033 0.04 16.1 1.9 1 23 170 192 170 192 0.97 2 14 4.1e-06 0.0005 22.1 2.0 1 23 220 242 220 242 0.98 3 14 0.00096 0.12 14.7 1.4 1 23 248 270 248 270 0.98 4 14 0.012 1.5 11.2 1.8 1 23 276 298 276 298 0.95 5 14 0.0003 0.036 16.3 0.2 2 23 305 326 305 326 0.97 6 14 4.6e-05 0.0056 18.8 4.1 1 23 332 354 332 354 0.98 7 14 0.00013 0.016 17.4 4.9 1 23 360 382 360 382 0.98 8 14 0.00036 0.043 16.0 3.2 1 23 388 410 388 410 0.96 9 14 1.6e-05 0.002 20.2 3.1 1 23 416 438 416 438 0.98 10 14 0.00023 0.028 16.7 2.7 1 23 444 466 444 466 0.97 11 14 0.00056 0.068 15.4 2.6 1 23 472 494 472 494 0.97 12 14 0.00062 0.076 15.3 0.6 1 23 523 545 523 545 0.93 13 14 0.00025 0.031 16.5 0.8 1 23 551 573 551 573 0.98 14 14 1.7e-05 0.002 20.2 0.8 1 22 579 600 579 600 0.97
Sequence Information
- Coding Sequence
- ATGGTGGATATGGAATATAAAGTGAAGGCTGAACCTCCTGAAACAGAAAGTGCTCATAATTCTGAGATGCTTGAAGAAAATCTTTTGGAACCAATTGTGGTGCTTTCAACAGATAACTCAGTTAAGAAGCAGACCCATGATGAAATTAGCCAGGAACTGCTTGCCATTGCAAATAGCAATGAAAACTTCCTTAAGAACATCGAGACATGGGTTTATGGCTGTGATGTTGAAACTAAGGATACTCGGTGGAAAAGCATGTCTGATACAACAGAAGAAAACTTGTTTCTCCCTTCTTTTAATGAAGAAAGGGAAAATTTTGCAAACCAGAGCAACAATACTATTGAGAAGCAATCTACAACAGAAGAAGCCCACTTACTTCAAAACATACCTGCCTCCGAACTTTCAAATAGCCATGATCAGCAATGCAGCCCtcaacaaaataaagaagaaacagCAGTGGATGAATGCAGCCAGTCTTCAAGCACATCAACTCAAAATGATGTTACTCATACATGCAATACCTGTGGAGAGTCATTTTCAGAACTGCAGGACTTAGAAACACACAAAAGTAAGCATTTAGAAAAAGATTCAAGCTGTAAAACTAGACATTCAAAACGCCGAAGAGCACATAAATCAGTTACTAGCATAAACAATAGTCACAAGTGTGAGCTTTGTGATAGAGTGTATAAAAATTCAGCATCTCTTCAGAGGCATCAATTAAGCCACTCAAATAACAAACCATATAGTTGTGATATATGCAATCAGGAATTCAAAGAAGTGCGCTATCTGAAGACACACAAATTAACACACACAGAGAAAAAGAAGCATATTTGTGAATTTTGTGGTCAGAGTTTTGTATCTGTAAAGCGTTTTGAAAAACACAAGCTAATTCATGCTCTGGAACAGTCAAACACTTGTGATGTTTGTGGAGTTAGGTTTTCTGAGGCAGAAGAACTGAAAAAGCATAAAGTGACACATGTAGGAGAGAAACCATTTTACTGTAGCCTTTGTGGAAAACGCTTCACAACAGTAAATCATTTGAAGTCTCACAAGATAACTCATACTGGTGAAGTATCACACACATGTGAAATCTGTGGGAAATCCTTCACATGGTCATGTTCTTTTAACAGACATATGCTGACACACACTGGAGAAAAGCGTCATATCTGTGAGGTCTGTGGGAAGGGCTTCATTGAATCGCATCATTTGCGATCCCACAAGTTAATTCACACTGGTGAGAAACCATACTCTTGTGAGGTGTGTGGAAAGAGGTTTCGCAGACTGAACCATTTGAGTTATCACAGACAGATTCATACAGGAGAGAAGCCACATGTGTGTAATATATGTGGTAAGGGCTTCATTCAAATTCATCAAATGCGAAACCACAAACTGACACATGCTGGGGAAAAGGAACATGAATGCACTACATGTGGTAAGGGATTTCATAGCCTTAACTATTTAAGAGCACATGAGATCACCCATATAAACACTAACATAGGTGATAAAGTGCTAACTAATGAACAGGTTCAGAAGTCTTCAGTATTTCCATACTTTGATGATAATCCATATATATGTGATGTTTGTGGAAAAAGCTTTACTCATTCCCGAATACTTGAAGATCATAAACTAGCTCATGTTGTTCAGAAGAATTATGAATGTGATGTGTGTGGCAAATGCTTAACTTCTAGTGTACGCCTAGATTCTCATATGCAATTGCATAACAGCATGAAACCATACATTTGCCAGACTTGTGGTAAAACCTTTGTACACAAACAATACTTTGCAGCACACATACGAACATGTTCTGACAAGAGTTGCACACCCACAACAAGACTGTGA
- Protein Sequence
- MVDMEYKVKAEPPETESAHNSEMLEENLLEPIVVLSTDNSVKKQTHDEISQELLAIANSNENFLKNIETWVYGCDVETKDTRWKSMSDTTEENLFLPSFNEERENFANQSNNTIEKQSTTEEAHLLQNIPASELSNSHDQQCSPQQNKEETAVDECSQSSSTSTQNDVTHTCNTCGESFSELQDLETHKSKHLEKDSSCKTRHSKRRRAHKSVTSINNSHKCELCDRVYKNSASLQRHQLSHSNNKPYSCDICNQEFKEVRYLKTHKLTHTEKKKHICEFCGQSFVSVKRFEKHKLIHALEQSNTCDVCGVRFSEAEELKKHKVTHVGEKPFYCSLCGKRFTTVNHLKSHKITHTGEVSHTCEICGKSFTWSCSFNRHMLTHTGEKRHICEVCGKGFIESHHLRSHKLIHTGEKPYSCEVCGKRFRRLNHLSYHRQIHTGEKPHVCNICGKGFIQIHQMRNHKLTHAGEKEHECTTCGKGFHSLNYLRAHEITHINTNIGDKVLTNEQVQKSSVFPYFDDNPYICDVCGKSFTHSRILEDHKLAHVVQKNYECDVCGKCLTSSVRLDSHMQLHNSMKPYICQTCGKTFVHKQYFAAHIRTCSDKSCTPTTRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -