Mvio002603.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- lin-13
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:86362964-86369503[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.00014 0.017 17.3 2.9 1 23 15 37 15 37 0.97 2 34 0.59 72 5.9 5.1 1 23 68 91 68 91 0.93 3 34 0.00033 0.04 16.2 1.9 2 23 98 120 97 120 0.97 4 34 0.0024 0.3 13.4 1.0 1 23 195 217 195 217 0.96 5 34 0.054 6.6 9.2 0.1 1 23 325 347 325 347 0.92 6 34 0.28 34 6.9 3.1 1 23 364 387 364 387 0.93 7 34 0.0037 0.45 12.8 0.1 1 23 451 474 451 474 0.96 8 34 0.63 76 5.8 1.1 1 23 515 537 515 537 0.97 9 34 0.014 1.7 11.0 0.2 3 23 607 628 605 628 0.94 10 34 6.5 7.9e+02 2.6 1.9 1 23 650 673 650 673 0.94 11 34 2.7 3.2e+02 3.9 1.5 2 19 680 699 679 703 0.82 12 34 2.7 3.3e+02 3.8 0.0 2 23 713 735 713 735 0.91 13 34 0.38 46 6.5 0.3 2 23 742 764 741 764 0.91 14 34 2e-05 0.0024 20.0 2.8 1 23 772 794 772 794 0.97 15 34 0.0016 0.2 14.0 1.9 1 23 886 909 886 909 0.97 16 34 0.0034 0.42 12.9 0.5 2 23 916 938 915 938 0.96 17 34 0.37 45 6.6 4.6 1 21 964 984 964 985 0.95 18 34 5.6e-06 0.00068 21.7 0.6 1 23 1005 1028 1005 1028 0.97 19 34 1.6 2e+02 4.5 0.1 2 23 1032 1055 1031 1055 0.93 20 34 6.9 8.4e+02 2.5 0.6 1 23 1059 1083 1059 1083 0.93 21 34 3.4 4.1e+02 3.5 4.3 2 23 1151 1172 1150 1173 0.93 22 34 0.13 16 8.0 0.4 1 23 1177 1200 1177 1200 0.94 23 34 0.098 12 8.4 0.0 2 23 1259 1281 1258 1281 0.92 24 34 0.00019 0.023 16.9 0.3 1 23 1310 1332 1310 1332 0.97 25 34 0.00026 0.032 16.5 2.3 1 23 1343 1367 1343 1367 0.91 26 34 4.8 5.8e+02 3.0 2.0 2 23 1474 1496 1473 1496 0.92 27 34 0.84 1e+02 5.4 0.2 2 23 1503 1525 1502 1525 0.94 28 34 5.8 7.1e+02 2.8 1.2 1 23 1536 1558 1536 1558 0.92 29 34 0.024 3 10.3 5.1 1 23 1574 1596 1574 1597 0.95 30 34 0.055 6.7 9.2 2.1 1 23 1614 1636 1614 1636 0.97 31 34 0.00026 0.031 16.5 2.5 1 23 1717 1739 1717 1739 0.98 32 34 0.00038 0.046 16.0 0.1 1 23 1772 1795 1772 1795 0.96 33 34 0.12 14 8.1 0.0 1 23 1814 1837 1814 1837 0.94 34 34 0.0072 0.87 11.9 2.4 1 22 1841 1863 1841 1863 0.96
Sequence Information
- Coding Sequence
- ATGCTTCCCAGACTTGAAGATGACCAGTCAGAGGAGACCTTGCACACTTGCAGCATCTGTAACAAGGCCTTCTCCAGCAAGGGCCATCTTGCATTACACAACAAGATACACACCAAGGAGTCTGCCACTACCAAGTCAGCACAAGAAGCCAATAATTCCTCTGCCTCGGGTACTGCATGGAAGAGTGGCTATTACCGCCCATATCACTGTGATCTTTGCAACAAATCATACTCAACAGCTAAGCATCGCTGGGGCCATGTTAGCGTATGTCACCGTGGTGATCCTTTGGTGACCTGTCCAGTGTGCTCCAGAGTCTTTTCCACGTGCTATAATCTTGGAGAGCATAAAAGGACAAAGCACGGTATTGAGGATGACAATGATGGCAACTTAGTTGATGTTCCAGAGGAGGCTGTACCTTCTATCAAAACAAAGTCTGTATCCAGCCCCAGACACTCACCATCCCCTAAAGCATCACCATCTTTCCCAagtaataatcttttaaaatcaCTGTCAACTACTGCCAAAAATCAACAGCCACAGCCAGCACTTTTTTCCTTGGATGAGGGAAATACAGCAGTTCTACATACATGTGCACAGTGCCTCAAAGTTTTCAAAACAGAGGGTGAACTTGAGAGGCATTCACTTAGCCATTCACGATCTTCTGCAGAGCATTCTACTCCAGAACCTTCTCGTAAATCTATCTCTGGCTTTAGTAGTGAAATGAGCTTGTTAAAGCAGACTTTGTTACAGAATCGCAGTAATACAGCAGATGGAAAAAAGAGACATTCTTCTGGGGATGAAGCAGAATGctcagcaaataaaaaaattgcagctgcaaATGCTCCAGAAACAACTCCAAGTGGTGGCAGTAGACGAAAAAATTCAAAGCCACGAAAGATAGAGCAGCGCAATGaggaaattacaaaagaaaatttagagtTAAGTAGTGAAGATTCTTTGGCAAATCAAGGCTATATATGTGGTGTCTGTTCacaaatgttttcatctgtaacAGAGCTTCAAGAGCATAATGTGGTTCATGAAGAGGAAGCAGTTGTCACAGCTACAGAAAGCAGTACTGCCAAACCTTTCTCTTGCCTTCTCTGTGAAAAAGATTTTTCATTGCGCACATCATTGAGCCGTCATTTTAATGCCTGTCATGGCATAGATCCTGCTGAAATCATGGATATCTCAAAATATCAACGTCCACCAAAGAAAGTTGTTCCCATAACCAAAGAGAATGATAAGGTTCCGACTATGGATGAAGAAGATCTTTTCGGTATTGatgaagaagatgatgaagaaaGTGACCCTAGAGGAACTGAAGGCAAATCACAGCAAGGGGGTGGTTTTGCTTGTGAGGTTTGCAGTAGGGAATTTGGTGACCGTGCTTCACTCTGGCTACATTTGCGCTACACTCACAAAGAATATGCTGCCTATGCCTGTGGGGTTTGTTTGCAGATTTGTGAAAACAATACACAGATGTATGAACACTGGACAACCCAGCATCCTCCAGATCGTGCGTCCACAGAACAAAGACGGTACAGTTGCCAGATGTGTGGGCGGCAACATGATTCTCGTAAGAAGCTTTTGGCCCATGTCCTTGTGCACAATTTGGATGATGGTTCGGGTGGCACTTATGATCCAGAACTGCTAGTCACTCTAAACACTGGCTTTTATAACTTTGATGGCCAAGAAAACCATGAGAGTCCTGCCACAGTAAATGAGTTTAATTCATCTTTGGATCCAGAAAATGTTGGTGTAGAATGTAGTGGAGGAGAATACTCCAATACTGCTGGAAGCTCAGCATTGTTTGGGTGCGAGTTGTGTTACAAATCATTCCCCACTGAGGATGGTCTTGTGAAACATAAGAAGGGGGCTCACAGGCTGGACCCCAGAACAAGCTCTTCCACATCAAACAATTCCAAAGGTTCATATCAGTTGTATTTTGTATGTGAGCTTTGTGGAAGCTCGCACAGGAGCAAATCTGAGCGCTGGAGGCACGTTTTCAGGACACATGGTGGGGAGCAAGCATTAACCTGTGACAGACCAGGATGTGGCAAGGTATTCCCCACTCGGGCTTTAAGACACGACCATTGTACCAATCACCACCGCCTTCAGGGAGCCACACCAAATGTCTGTGAAATATGCGGTAAACTTTGGGGAACTCGAGTTGATTTCTGGAAGCATCTTATGGGTGTTCATCCAGACTGTGTTCCACTGACATGTGGGGTTTGCCTGAAGATTTTTTGTTCAGTTCCAGAACTTCAGAGCCATGTAAGTGCAAATCATGTGCCTCTTACTGGTGGTGACTTCTGCTGTGACATTTGCGGTCGTCCTTACTCCAATAGATCAAAGCTTTCACGTCACCGAAGGATCCATTTGGTTGGTGAATCTGGAGACATTTCTTCCTACTCAGAAATATCCTTTAGTGCTCCTGGTTCAGCAACAAAGAAATCGGCCCCCCCTCCATTGACACCAAAATCATTGCAGGATACTGCAGGAAAATTTGACAGATCCCAAGCTGAGTTCCTAGGGTTTAAAAATAAGCCTAAACCACCAGTACTTCCACCTTTGTATTGCGATGCATGTCCAGATGCAGTCTttgaaaacataactaaactggCAGAACATCGCCGCATTATCCATGGCCTTTTCCCGTGTGACCTTTGCTCCAAGTTTTATGGGCGCACATCACATTTATGGAAGCATGTTAAGCGAGTTCACAATAATCATCCAGAACTGACATGTCCTATCTGTAAGCGTATATCTGCAAGTAAGATCCATTTAGAAACTCACATTGCTACTAAGCACCGATCTATGGAACCAAAAACCTCCACTCCAAAGGCACAGGGACTGGAAGCTCCTTCACCCGGTACACCCACATTGTATCCTTGCCAGCAGTGTTCTACACAGTTCTACAAATACCATCTCTTGAGAAAACATCAACAGCATTGTCCAGCAGGATCTCAACCTGAAAAGATTAAGTCAGAAGAAGACATTGCAAAAGAATACCCTTGTGAGAACTGCTCTAAGGTGTTTTCTTCTAGTTCGAAGCTTAGGGATCACCGGAGAGTAATTCATGCCCCACAGACTTGTGAACTCTGCCCAGATGTGACGTATATTTCTAAAGTAGATCTCTTGCAGCATATCAAGAGCAGTCATGCTGATGCTTTTGCATGTTCTCATCCTGGATGCAATCGCACAATGAGATCACGGGCTGATCGTGATCGCCACATAGCAATGCATCGCTCATTCAAATATCCGCCTACATGTTCTTTGTGTGGTGAAAATTGCATGAATCGTGTCAAGGCATGGAGTCACTTTTCAACACGTCACAAATCTGCAATTTCAAATGTATGTGGTGTTTGTTATGATCACTTCCCTTCCACTGGAACATTAGTGGAGCATGTCCGTGCTCTCCATGCAAGGGTCCTCAGGAATAAAGACACTTGCAAGATATGTGTCAAGACATATTCCAGTTTTTACAAGGTACTGTTGCACCATTCTAATCATCATCCAGATTATCACATTTGTCGAGAATGCCTTGAGGTGTTTGCTGAAAAACAGGACCTAGAGAGTCACACTGAAAAGGAACATGGaaatgaagaacaagaagaaaaagaggaggaggaaaaggaagATGATAAACTGCAGGatgatacaaagaaaaatataaatacttctgAGGTAAAAACTGAAGAGGCTTTAGAGGAAGCCTTGGAGCCAGGTGAATCTGTAGATAAGAAAGAAACAGCAGAAAAAGATGGGATACAATGTGACCAATGTGGAGAAGAATTTGCTACAGAAAATGAACGGAATGAACATATTGCATTGAACCATAACACAGAAGGTGCCATGGCCAAGCGTCAGCGTGTATCTGATACTGGGGGCAATCCCAGTTGTGTTAAGCGTCCCCGCCGTTCATATGATTGTGAAAAGTGCTCTGAGGTGTTCCGCACACCATCAGAGCTTGTGGAGCACAAGAAGCAACATCAAGGAACACCTATACCGGAAGTGAAGCCATACCACTGCAGTCAGTGTGAGAAGTACTTCACCAACAAGTCATCTTACTGGAGGCATATAAACTCTCCAGCACATCATGCAGCAAAGCTGCAGGTGCAACAAAAATCTATCAATGAACATTCCACACAGAGCAGTGACAGTGCAACAAACAAGAGCACGGTGTGTATCCCTGAATCCAGTCTCAGGGAAACGCTGATGAGAAGAGCAAAAATAGAGTTGGACATGCTGGATGATAGTGACCATGACAACAAGAGCTTTACTGGAAGCGACATTGATAAGGAAGCAAGCTTAGAGAATGAAAGTCTTAAAGAGTCTACAGTAACAGTGCAGAAGTCCAATAGAAAGCGCCCAGAATCACGTAAAGTGTACAGTGGAGGACCAGATGTTCCATGCCAGTGTCAGTTATGTGGTAAGCGCTGGCCTGCAATGAAGCATTTATGGCAGCATCTTATTCGTAACCATCGCCAAGAGGCAGCAGTAACCTGTGGAGTATGTCTTGAAGTGTGTCAAGACTACAGCAGTCTCTCTGCACACTTAGCCTCCCAGCATCCAGATAATTTTATTGGTGAAGGCAACAATTTTACATGCCGCATCTGTGGTCGCTACCACAATGCACGATCAAAACTTATCCAACATGCTACCATTCACATAATTCTAGGATCAGCTCCAGAGGAACAGCCTCAATCAAATGTTCATTCCTGTCGTTTCTGTTTTAAAGCATTCACCAATGAAAGCACCCTTGATGAGCATCTCAAAATGCACCATTCATCTCCCAGTGTAACACAGGCATCATGTCCACCTGAACGGTCACCACATACATGTGATATCTGCTTCAAAGTGTGCGGCAATGAAGGAGCTTTGGTGACTCATAAGAAAAGTCACCAACGGGGAACAAATGAGTATCGCCCTCAGAGTGAAGAGGCAGATGTGATACAAACAGATGAGGAGAGCAATGAATCTGACATGGACCAATAtggtgaagaagaagaggaggacgatgatgatgatggtgatgatgatggtggtggtcaagaagatgatgatgaagatgatgataatgatgaacaAGATGATGACAATgaagaggatgaagaagaaggTGTCAGTGAGCGCAAACAGTTCTATAGCTGCAGCATGTGCTCTAAGACTTTTAGAGACAAAGAAGAGTTTGCAGATCACAAAAAGAAACATCCTCATATTTCTGATTTGCAGTTGCAGATGAGGAGGACACAACCAAGAGTGAGCATTGCAGAGTTGCCAAAACAAGAAATAGAGAAACAAACTTTTTATGTGTGTAGTGTATGTAGTCAGGTATTTAAAACACAAGCAGCACTTGCAATGCATCAGGATAGGAATCACCGACCACATGAGCCTCCAGCATCACAAATGTCAAGACCATTGAGCATTGGGAAATTCCCTTGTGCTTCTTGCAGCGAAAGTTTTTCTACAATTGCTGCGCTTTCAGAGCATGTTAAAGCAAGCCATGCCAAGATGTTCACTTGCACCCGGTGTAACAAAAAATCTTTCTCTTCTTATGGTAATCTCACTAAACACTATCGCATGTGCCAGTCATCCCACAGACTCCAGCAATCTCAGAGCAAAAATCAACTAGAGAGCTCGACAAACTTGTCTGAAGATAGTCACGACTCTTCAGGTGATAATGAGGAAACTGGAGATGAAACTGAGAATAGCAGAAGTATacttcattcttattctaatgcAAGAAATGTTAAAAGTCTAACTGAGCAAGGTGCCAAAAGGACAGAAGCACAGAGCACTTTAGATTCAGTGATTGGGATCCCAAATATAGGCTTGAGCAGATTAAGCAGTAGTTCTGATGATTCAGATGAAGATACTACCAGATTGCAGGAATGCACTAATGGCAATATAAATAAGTCAACAGAGTTGTCACCTCTCAAATCTTATGTTTCAGATCATGAAATCAGAACTTCAAATAGTAACTCAGAAGCTAACGAGggtaatggaaatataaaacagaatgagGTAGGCCTAACATATGCAACATCCTCTGAAATTGCAGGTAGCAAGCCAGAAATTGATTCCATTGTCATATTAAGTGATGATGAATCCCAAACTTCTGTCAAATCTGTGGAAAAGGAGAATAAGGAAATATTTGTGGTATCATTGAGTGATGATTCAGAAATGTCCTTTAAAGACTGTAAGGAAAGTACAGTAACAGTGGTTAGTGAAAATTGTGCAACATCTGAAGTGATTCAAACCGAAATCAAGCAGGAACTGGCATATCTGGAGGACCAAACTTCTGTAAAACCTGAGCCTATTGATCGTGCTAATGAAAGGACTGGAAGTGATAGTGACACAttacaattaataacaaataGCACGGAAGAAAGCAATCTGATAACCAATGCTGCTTCTGAAGATATAAAACCTGAAATGAAAGATACTGTTAATATGGAGGAGGTGAAAGGTAAAGACTGTTTCTTCTCCTTAGAAGATGCATTAGTGGACTTAGAAGCTGAGAATAGTAAGTGA
- Protein Sequence
- MLPRLEDDQSEETLHTCSICNKAFSSKGHLALHNKIHTKESATTKSAQEANNSSASGTAWKSGYYRPYHCDLCNKSYSTAKHRWGHVSVCHRGDPLVTCPVCSRVFSTCYNLGEHKRTKHGIEDDNDGNLVDVPEEAVPSIKTKSVSSPRHSPSPKASPSFPSNNLLKSLSTTAKNQQPQPALFSLDEGNTAVLHTCAQCLKVFKTEGELERHSLSHSRSSAEHSTPEPSRKSISGFSSEMSLLKQTLLQNRSNTADGKKRHSSGDEAECSANKKIAAANAPETTPSGGSRRKNSKPRKIEQRNEEITKENLELSSEDSLANQGYICGVCSQMFSSVTELQEHNVVHEEEAVVTATESSTAKPFSCLLCEKDFSLRTSLSRHFNACHGIDPAEIMDISKYQRPPKKVVPITKENDKVPTMDEEDLFGIDEEDDEESDPRGTEGKSQQGGGFACEVCSREFGDRASLWLHLRYTHKEYAAYACGVCLQICENNTQMYEHWTTQHPPDRASTEQRRYSCQMCGRQHDSRKKLLAHVLVHNLDDGSGGTYDPELLVTLNTGFYNFDGQENHESPATVNEFNSSLDPENVGVECSGGEYSNTAGSSALFGCELCYKSFPTEDGLVKHKKGAHRLDPRTSSSTSNNSKGSYQLYFVCELCGSSHRSKSERWRHVFRTHGGEQALTCDRPGCGKVFPTRALRHDHCTNHHRLQGATPNVCEICGKLWGTRVDFWKHLMGVHPDCVPLTCGVCLKIFCSVPELQSHVSANHVPLTGGDFCCDICGRPYSNRSKLSRHRRIHLVGESGDISSYSEISFSAPGSATKKSAPPPLTPKSLQDTAGKFDRSQAEFLGFKNKPKPPVLPPLYCDACPDAVFENITKLAEHRRIIHGLFPCDLCSKFYGRTSHLWKHVKRVHNNHPELTCPICKRISASKIHLETHIATKHRSMEPKTSTPKAQGLEAPSPGTPTLYPCQQCSTQFYKYHLLRKHQQHCPAGSQPEKIKSEEDIAKEYPCENCSKVFSSSSKLRDHRRVIHAPQTCELCPDVTYISKVDLLQHIKSSHADAFACSHPGCNRTMRSRADRDRHIAMHRSFKYPPTCSLCGENCMNRVKAWSHFSTRHKSAISNVCGVCYDHFPSTGTLVEHVRALHARVLRNKDTCKICVKTYSSFYKVLLHHSNHHPDYHICRECLEVFAEKQDLESHTEKEHGNEEQEEKEEEEKEDDKLQDDTKKNINTSEVKTEEALEEALEPGESVDKKETAEKDGIQCDQCGEEFATENERNEHIALNHNTEGAMAKRQRVSDTGGNPSCVKRPRRSYDCEKCSEVFRTPSELVEHKKQHQGTPIPEVKPYHCSQCEKYFTNKSSYWRHINSPAHHAAKLQVQQKSINEHSTQSSDSATNKSTVCIPESSLRETLMRRAKIELDMLDDSDHDNKSFTGSDIDKEASLENESLKESTVTVQKSNRKRPESRKVYSGGPDVPCQCQLCGKRWPAMKHLWQHLIRNHRQEAAVTCGVCLEVCQDYSSLSAHLASQHPDNFIGEGNNFTCRICGRYHNARSKLIQHATIHIILGSAPEEQPQSNVHSCRFCFKAFTNESTLDEHLKMHHSSPSVTQASCPPERSPHTCDICFKVCGNEGALVTHKKSHQRGTNEYRPQSEEADVIQTDEESNESDMDQYGEEEEEDDDDDGDDDGGGQEDDDEDDDNDEQDDDNEEDEEEGVSERKQFYSCSMCSKTFRDKEEFADHKKKHPHISDLQLQMRRTQPRVSIAELPKQEIEKQTFYVCSVCSQVFKTQAALAMHQDRNHRPHEPPASQMSRPLSIGKFPCASCSESFSTIAALSEHVKASHAKMFTCTRCNKKSFSSYGNLTKHYRMCQSSHRLQQSQSKNQLESSTNLSEDSHDSSGDNEETGDETENSRSILHSYSNARNVKSLTEQGAKRTEAQSTLDSVIGIPNIGLSRLSSSSDDSDEDTTRLQECTNGNINKSTELSPLKSYVSDHEIRTSNSNSEANEGNGNIKQNEVGLTYATSSEIAGSKPEIDSIVILSDDESQTSVKSVEKENKEIFVVSLSDDSEMSFKDCKESTVTVVSENCATSEVIQTEIKQELAYLEDQTSVKPEPIDRANERTGSDSDTLQLITNSTEESNLITNAASEDIKPEMKDTVNMEEVKGKDCFFSLEDALVDLEAENSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -