Mvio000975.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:28479519-28494728[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.3 4.1e+02 3.5 0.0 1 23 211 233 211 233 0.94 2 17 0.0036 0.44 12.9 1.1 2 19 249 266 248 268 0.93 3 17 0.67 81 5.7 0.7 1 23 276 298 276 298 0.90 4 17 0.00031 0.037 16.2 0.3 2 23 305 327 305 327 0.96 5 17 6.1e-05 0.0075 18.4 2.3 1 23 333 355 333 355 0.97 6 17 3.5e-05 0.0042 19.2 0.5 1 23 361 383 361 383 0.97 7 17 2.4e-05 0.0029 19.7 7.6 1 23 389 411 389 412 0.96 8 17 8.8e-05 0.011 17.9 0.9 1 23 429 451 429 451 0.98 9 17 0.0031 0.38 13.1 0.1 1 23 466 489 466 489 0.96 10 17 0.015 1.8 10.9 0.7 1 23 495 517 495 517 0.99 11 17 0.0041 0.5 12.7 0.2 1 23 545 567 545 567 0.98 12 17 0.00058 0.07 15.4 1.0 1 23 573 595 573 595 0.98 13 17 3.2e-05 0.0039 19.3 0.5 1 23 601 623 601 623 0.95 14 17 0.002 0.24 13.7 1.6 1 23 629 651 629 651 0.97 15 17 0.02 2.4 10.5 2.3 1 23 657 679 657 679 0.96 16 17 8.4e-07 0.0001 24.3 0.9 1 23 685 707 685 707 0.98 17 17 0.00015 0.018 17.2 0.5 3 23 715 735 714 735 0.95
Sequence Information
- Coding Sequence
- ATGTTTGATGAAGGAAAGGCGAGTGTGAATGGTTCCTCTGAAGAGAAATTATGGTATAATATCTCCAGCAGTACTAAAAACAGAACTGCAGACTGCAAAAACACCTTGATAGAGGATCAAAATGTACATTCAGCAAAGAATATCATGTGTTGTCCCCTTTGTTGTGATGGCAAGATGAAAATTTGTAGTGAGGAGCAAAACACATTTGAGGATGAAGGATTGGAAATCCCATTTCTGTGTCATACATCTGAGACAGAAGATGATAGATCCAGCAGCAAGAGTAATACAGCAGAACCTTTAGATTCTGATATTTATCAGAACTCTGTGAAAGAAAGTGACATCATTTGTGAAGTTAAAAATGAATCTTGTACTTCTTATTCCTTTATAGAAGATAGTGAGAAATGGTGGAATGGTGATAGTTCACTTGAAAATGCTGAAGTTTTAGTTGCCACTTTAAGTCCATCAGAAACAAGAGAACTTTGTGGTATCCCTGGAAAAGATGTAAATGGTGTTCTTATGCTAAACTTGGAAGATACAGAGCAGAACATTTTATGCCAGTTTTGTGGTGAAGCATTCCCCAGTGTTGAGCAGTGCTTGGAACATTCTGTGGCACATGCTGAGGATGGCTGTTACCCATGTGCCCTCTGTGGGGCTGCTCTTGAAGGTGAGCAAGAATTGGCATATCACATTGAAGAGCATAAGAATGATGATAAGAAGGCCTATAAACAATCCCGTGGTCGTCTTTCCTGTGATATTTGTGGAAGAAGATTTAATAATGAAAGAACTCTGAATGACCATTCATGTGGATCTAGTGAAGTGAAACAGTTCCGCTGTGCAGTTTGCAAGAAGCCATATGTTTCTGAAGAAAGACTTGCTTTTCATACTAGGTTCCACGAGGGAGCAAGGCCAAACTACTGCACCCAGTGCGGAAAAGAGTTTGATAATGAGGGCAGTCTGTATTATCACACACGCATGGTGCATGAAGGTGCACGTCCATTTTGTTGTGAGCAGTGTGGCAAACGATACTACTCCAAAGCACGTCTGGAAGCACACCAGCGTGTGCACTCTGGGGAACGTCCTTttgaatgtgaaatttgtgggcgCCGTTTCTATGATCGTGAGACACTCAAAGGTCATTATGTGACACACATGTCTATTAAGCCATACCAATGTGATCTCTGTGGAACTTGTTGTGGTCGTAAAAGTATGCTGAAGCAGCACATGCGTACACATCACTCAGTTGATGGCCCAAATGCACCAAAGAGAGTTGCTTCCCTTATACATtactattgtaaaatatgtaatgaaacatttactaGTTCTGCAGATGTATTAAGCCATCGCACGACACATTGGGATACCAGTGCACCTAACAATGTAGATGGAAGGCGAGTTCACGTTTGTGAATATTGTGGGGAATCTTTTGCTGCAGTGAATGCTCTTGGTAGACACCGTAAAATAGAACATCCTGATGAGCAACCATATGTCTGTAGCATATGCAAAGAAAGATCGCAGACACTTTATGAGGCTAGAGTTCATCGTAGAACTCACACATCAGAAGATACTGAAGAAACAAAAGATACAGGAACTGCACTTAAGACTGAATCTGGAGGACAACCAAATCCAAAAGTGTTCATCTGTGAGGAATGTGGCATGACTTCAATAGGTCGGCGTAAGTTTGCAGCACATATGAAGAGTCATAGAGTTCATCTTCCATATCAGTGCTTGACCTGCGGGAAGCGCTTCCCTGAGAAACAGAGATTACAGGTGCATTCACGTCTTCATACTGGTGAGAAGCCATATTTCTGTGTGGAATGTGGAAAACGTTTTACACAGTCATCAGCATTATATACACATGCTCTCTTGCATACAGGGGAAAAGCCTCATTCTTGTGATCTTTGTGGGAAGGCATTTCGTATTAAAGCAGACCGTGACAATCATCGACGCACACATACTGGAGAGAAACCATATCGCTGTGAGTACTGTCAGAAGCAGTTTCGTACAGGACAAGTGTATTACCAGCATCGTATGATTCATACCGGGGAGCGGCGTTTCCCATGTGATATTTGCGGAAAGGCCTTCAAAAGATCACACACACTTGTGGTTCATAAACGTATCCATACTGGTGAGAAACCAAATATATGTGATATCTGTGGCCGTGGATTTAGGCAAAGAACAGATATGAAAAAACACAGAGCATTGCATACAAATTCATTGTTCACATGA
- Protein Sequence
- MFDEGKASVNGSSEEKLWYNISSSTKNRTADCKNTLIEDQNVHSAKNIMCCPLCCDGKMKICSEEQNTFEDEGLEIPFLCHTSETEDDRSSSKSNTAEPLDSDIYQNSVKESDIICEVKNESCTSYSFIEDSEKWWNGDSSLENAEVLVATLSPSETRELCGIPGKDVNGVLMLNLEDTEQNILCQFCGEAFPSVEQCLEHSVAHAEDGCYPCALCGAALEGEQELAYHIEEHKNDDKKAYKQSRGRLSCDICGRRFNNERTLNDHSCGSSEVKQFRCAVCKKPYVSEERLAFHTRFHEGARPNYCTQCGKEFDNEGSLYYHTRMVHEGARPFCCEQCGKRYYSKARLEAHQRVHSGERPFECEICGRRFYDRETLKGHYVTHMSIKPYQCDLCGTCCGRKSMLKQHMRTHHSVDGPNAPKRVASLIHYYCKICNETFTSSADVLSHRTTHWDTSAPNNVDGRRVHVCEYCGESFAAVNALGRHRKIEHPDEQPYVCSICKERSQTLYEARVHRRTHTSEDTEETKDTGTALKTESGGQPNPKVFICEECGMTSIGRRKFAAHMKSHRVHLPYQCLTCGKRFPEKQRLQVHSRLHTGEKPYFCVECGKRFTQSSALYTHALLHTGEKPHSCDLCGKAFRIKADRDNHRRTHTGEKPYRCEYCQKQFRTGQVYYQHRMIHTGERRFPCDICGKAFKRSHTLVVHKRIHTGEKPNICDICGRGFRQRTDMKKHRALHTNSLFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -