Mvio016301.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060834.1:8410623-8478574[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1e-07 1.3e-05 27.1 0.3 1 23 204 226 204 226 0.98 2 14 2.7e-07 3.3e-05 25.9 2.1 1 23 232 254 232 254 0.98 3 14 0.00012 0.015 17.5 0.5 1 23 444 466 444 466 0.98 4 14 3.1e-05 0.0037 19.4 0.7 2 23 473 494 472 494 0.97 5 14 1.8e-05 0.0022 20.1 4.6 1 23 500 522 500 522 0.95 6 14 0.00013 0.015 17.4 5.3 1 23 528 550 528 550 0.97 7 14 1.4e-05 0.0017 20.4 4.7 1 23 556 578 556 578 0.97 8 14 4.8e-06 0.00058 21.9 1.2 1 23 584 606 584 606 0.97 9 14 6.7e-07 8.2e-05 24.6 0.9 1 23 612 634 612 634 0.95 10 14 2.9e-05 0.0035 19.5 1.7 1 22 640 661 640 662 0.89 11 14 0.0015 0.18 14.1 5.1 1 23 667 689 667 689 0.97 12 14 3.1e-05 0.0037 19.4 6.0 1 23 695 717 695 717 0.98 13 14 6e-05 0.0072 18.5 3.1 1 23 723 745 723 745 0.97 14 14 1.3 1.6e+02 4.8 0.5 1 12 751 762 751 765 0.88
Sequence Information
- Coding Sequence
- ATGACCAGTGACAAGGAGGGAGAAGCAAAAGGTGTTTGTTTGAGTAAGGGAAGGCAAGAGCTGCAAGGGAGCAGTGAAGACTCCATGAAAGGAGGCAGCAATAGCATACTTCAGTCCAAGCATGGCAGCATTCTTGAGTTGGGAAAAGATAAACAAAGTAGTGAAAGGAAGCTCATTCTCCCATTTAGATGCAAGCAAGCCTTTATTTACCTTGGGCTGATGTTCCATCCAAAGTCCATAACTGTGCCATGTGCTATTCATCAATTTGGTGCTTTTTATGTCCAGCCATTTTTTGTGCTGAAGAGAGGAATGGTGTTCACTCTGGTTCAGAGGGTGATAAGTGAATGCAAATTGGATGCTAAAGTAGAAATTAAAGAAGAGCCACTGAACTCTGATACATATTCAGTTCACTTGACATCAGAAATTCAGGAAGAAAACTCTTACAGTACTGACCATCAAGCTATGTTAAATCATGAGGATGAGAAAATGGTTGACATTACTTTGATTAAGGAGGAGGTCACAGTTGAAGTATTAAGTATTCCAGCCAGTGAAACAGGACAGGTTGCTCATTTGAAgagtcatcttttgattcatgatggCCAGAAGccttataaatgtgaagtttgtggaaagagctttacccaggcaaCAAATTTAAGAGAACATCTTTTGATCCATGAAGGCAGGAAGccccataaatgtgaagtatgtggaAAGAACTTTACCCAGTCATCTAATTTGAAAACTCATCTATTAATTCATGAGGTAGAAATAGTCATGTGTGGGCACAAGTTAACGCTCGTGCAGCACTGCTTTGCGGTTAATCTTTGGGCGGAAATGATAAACAATGCCTTATTGAGCCCTTATGTGCTTCTTCAACGCATGACAGGGCATGTGTATTTGGCTTTTCTTCGAGAAGTGCTGTTCTCAGAAATCATGGAAGAAATTCCTCTCAATTTACGCTTTAGGAGTGATGCCAAAGAGGAGCATAAGTTTGACATAGCCTTAGAGGAGAAGATTAAAGTTGAAGAATTGAACTTTCCAGCCTTTGACATAGCCTTAGAGGAGAAGATTAAAGTTGAAGAATTGAACTTTCCAGCCGTTGTTGCAGgACCAAATAAGCTAGACCTGCCCAACGAATTAGAAAGTTCATCCAGCACTTCTGTTATTGAGGTTATACCAGACTGTAAAGACAAAACAACAGAGGAAATAATTTCCTGTAAATTTTACAGTGATACTTTCACAGCCTCTACTTCTTCTTCAATAAAAGAGCTGATATTAAATTGTGAGCATGATAAATGTAATTTCAAGCTTGACAATAAGAGGCTACATAAGTGTGAAGTGTGTGGAAAAGAGTTTAATGTGGTATATGGTTTAAGACAACATCTTATGATTCACGagattaagaaaacaaataaatgtgaaatttgtgggaaaatcTTTATTCGTCTATCTTATTTTAGGGCCCATCTTTTTAAACATAAGAACCAAAAGCCACAtaattgtgaagtttgtggaaaaagaTTTACACGGTTATCTCATCTGAAGACCCATCTTTTTATACATGAGAACAAGCGACCATAtaattgtgaagtttgtggaaagagatTTACGCGTCTATGTCATTTGAGGACACATCTTTTTATACATGAGaataagaagccacataaatgtgaagtttgtggaaagagtttcaATAGAGTCTCTCATTTAAGAACTCATGTTTTTACACACGAGACCCAGAAGCCTTATGAATGTAAAGTCTGTGGAAAGAGCTTTGCCCAGGCCTGTAATTTAAGGCTACATCTTTTTATTCATGGGGATAAGAAACCACatatatgtgaagtttgtggaaagagttttacccaAGCAGgtaatttaaagaaacatctttttatACATGAGAACAAGAAACCACAtatgtgtgaagtttgtggaaaaagctTTACCCAGGCTGGTGATTTGAAGAGACACTGTATTGTACATGAGAacaagccacataagtgtgagcTTTGTGTAAAGAGCTTTACCCAGTTATGTGATTTGAAGAGACATCTTTTTATACATGAAAATCAGAAGCCGCATAAGTGTGaggtttgtggaaagagttttaccaAGTTATGTTATTTGAAGAGACATCTTTTGACTCATGAGAACAAGAAGCTACATATGTGTGAGATTTGTGGAAGGAACTTTATCCAGTTATGTGATTTGAAGAGACATCTTTTGACTCATGAGAACAAAAAACCATATGAATGTGAGGTTTGTGGAAAGATTTGTAACCATATAGGCTTGAACTCCTGCTCAGTTCCCTGGAGAAAACGGCAAAGACCACGTCGTAGGCCTAAACCACCAAGATTAGGAAAATTAATAGCATGCCTAAGCAAGGAAACAGAAAGGAGTCGACGCCCAGTAAGTCTAATCAGTGACAGCGACAGTAGTCGTATGCTCATTGACGAAAACTGGCCGGGGATCGCCGCTGGTAGCTCTCCGACCTATGTCACCGCTAAAGATCGAATTTCGGGGACGGTGAGTGAGGAGGGCACAAGAGTAACAGTAGCTTCCGGGGACTCCCCTTTGCATAGAGAGAAACAGGATCTTTCCAGAGTGCAGTTTGTTCATTACTGTACCCAAGAGTCTGGCCGCTTTGACCAACGAATACAGGAACCATCATATGAGCATGTGCTCAGCCATAGTGTGTTAGTGCGCACAGTCTGTGGTCAGTCTGGCCACGGAGCAAGATGGAGGTTCTCAAGGTACCTAAGCTGCAGTATcccaacagcagcagcaacagagCATCATCGCACCACCACATCCAGCATCCAGAGAAACACGACCTCAACGTACACAACACGTACAACCCCGTGCACCAGTACCAGCGACACAAGCAGCATAAACACCAAGCACACAACCACATCCATCATACCACACCTAATCATACCCAATCATACTCTTCCCTTCTTCATCAAGGGTGATGACCCGAGAGCTAGTTTTGATAGCGCCACACGGAGATTCCTGACCCTGTTAGGCGACGAGGATGTGGAGCGAGCATTCGACTCAGTATGCCACGCGGGGCTCCTGTACAAGCTCAAGGAACTAAAATTCCAATACACAATGGTCAAACTTATTGCACACTACTTAATGCGAAGGACTTTCTCTGTACCACTAAAGGGAGTGGCGTCCTATCGGCGCCACGCGGTTGCCAGTGTGCCACAAAGAAGTCTCCTAGGGCCCATTTTATTCAATATACGCACAAAAGAAATTCCTAAATCACCGAATACAATACTCTCCATATATGCTGATACATTTCCATAG
- Protein Sequence
- MTSDKEGEAKGVCLSKGRQELQGSSEDSMKGGSNSILQSKHGSILELGKDKQSSERKLILPFRCKQAFIYLGLMFHPKSITVPCAIHQFGAFYVQPFFVLKRGMVFTLVQRVISECKLDAKVEIKEEPLNSDTYSVHLTSEIQEENSYSTDHQAMLNHEDEKMVDITLIKEEVTVEVLSIPASETGQVAHLKSHLLIHDGQKPYKCEVCGKSFTQATNLREHLLIHEGRKPHKCEVCGKNFTQSSNLKTHLLIHEVEIVMCGHKLTLVQHCFAVNLWAEMINNALLSPYVLLQRMTGHVYLAFLREVLFSEIMEEIPLNLRFRSDAKEEHKFDIALEEKIKVEELNFPAFDIALEEKIKVEELNFPAVVAGPNKLDLPNELESSSSTSVIEVIPDCKDKTTEEIISCKFYSDTFTASTSSSIKELILNCEHDKCNFKLDNKRLHKCEVCGKEFNVVYGLRQHLMIHEIKKTNKCEICGKIFIRLSYFRAHLFKHKNQKPHNCEVCGKRFTRLSHLKTHLFIHENKRPYNCEVCGKRFTRLCHLRTHLFIHENKKPHKCEVCGKSFNRVSHLRTHVFTHETQKPYECKVCGKSFAQACNLRLHLFIHGDKKPHICEVCGKSFTQAGNLKKHLFIHENKKPHMCEVCGKSFTQAGDLKRHCIVHENKPHKCELCVKSFTQLCDLKRHLFIHENQKPHKCEVCGKSFTKLCYLKRHLLTHENKKLHMCEICGRNFIQLCDLKRHLLTHENKKPYECEVCGKICNHIGLNSCSVPWRKRQRPRRRPKPPRLGKLIACLSKETERSRRPVSLISDSDSSRMLIDENWPGIAAGSSPTYVTAKDRISGTVSEEGTRVTVASGDSPLHREKQDLSRVQFVHYCTQESGRFDQRIQEPSYEHVLSHSVLVRTVCGQSGHGARWRFSRYLSCSIPTAAATEHHRTTTSSIQRNTTSTYTTRTTPCTSTSDTSSINTKHTTTSIIPHLIIPNHTLPFFIKGDDPRASFDSATRRFLTLLGDEDVERAFDSVCHAGLLYKLKELKFQYTMVKLIAHYLMRRTFSVPLKGVASYRRHAVASVPQRSLLGPILFNIRTKEIPKSPNTILSIYADTFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -