Mvio000979.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:29042487-29070215[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.9e-05 0.0035 19.5 3.9 1 23 342 364 342 364 0.98 2 19 2.3e-05 0.0028 19.8 1.2 1 23 370 392 370 392 0.98 3 19 1.2e-05 0.0015 20.7 1.5 1 23 398 420 398 420 0.97 4 19 2.9e-07 3.5e-05 25.8 2.3 1 23 426 448 426 448 0.98 5 19 0.00025 0.03 16.5 2.9 1 23 454 476 454 476 0.95 6 19 1.1e-06 0.00013 23.9 3.0 1 23 482 504 482 504 0.98 7 19 2.4e-07 2.9e-05 26.0 2.3 1 23 510 532 510 532 0.98 8 19 9.7e-07 0.00012 24.1 4.6 1 23 538 560 538 560 0.97 9 19 7.3e-06 0.00089 21.3 1.3 1 23 566 588 566 588 0.97 10 19 3.5e-07 4.3e-05 25.5 0.2 1 23 619 641 619 641 0.98 11 19 4.5e-05 0.0055 18.9 5.3 1 23 647 669 647 669 0.98 12 19 1.4e-06 0.00018 23.6 3.5 1 23 675 697 675 697 0.98 13 19 1.1e-06 0.00013 24.0 3.9 1 23 703 725 703 725 0.98 14 19 1.4e-07 1.7e-05 26.7 3.9 1 23 731 753 731 753 0.98 15 19 3.8e-06 0.00046 22.3 1.6 1 23 759 781 759 781 0.97 16 19 1.1e-05 0.0013 20.8 3.7 1 23 787 809 787 809 0.98 17 19 1.8e-05 0.0022 20.1 3.2 1 23 815 837 815 837 0.98 18 19 2.6e-06 0.00032 22.8 1.3 1 23 843 865 843 865 0.97 19 19 8.1e-06 0.00098 21.2 3.2 1 23 871 893 871 893 0.96
Sequence Information
- Coding Sequence
- ATGGATATTAAATTAGAGATAAAGGAAGAAGTACTTGACAATGATCAGATGATACCAGCAAGTAAAGGAGAAAACTCTTGTAAAACTGCTCATGAAGATGTGGTGGGGAATGAGATAAAGGAGGAGAAAGAAGTTGATATTTCTTTAATGAATGAGGTTATCACAGCTGAGGAATTGCATTTTCCATACAATGGTCCAAGATTGAAACAGAGCTCAGTTTTAGCTCAGGATTTATCAAGTTCCTCTAGAAATGTACCATCACTAGGAGGCAGCCTGTGCAATAGAAACTTAAAGGATTTTGAGCCGCAGAGTGCCGGTCAACAATATAATAATGCTGAAGAGCTTATACAACCAAAGGAAAAACAAGCAATGCACAACACTGACAACAAACTGGAACTATATTATCAGAACTTAAGAACGACTCAAGAgTCTCCAATAGTCATGAATGAAAGTACTGACCATGAGAAAATTAACATCAAACTAGAGATAAAGGAAGAACTGCTGGACCCTAATATGTATTCACTTGAAATGAAGCCAGAAGCTATGGAAGAAAATGCATGTATTGGTACTCATAGTGCTGTTTTGAAGAATGAGGAGTGGCATTGCAATGGAATCCAATGCTTACCTCTTACAGAATTTTGCTCTAGTGCCATCACTATAGTGAAAATCGACTGCAATAGGAAAAAAGGCTTATTATTGAGTTCTATCTTTTTCCGCGGCAGCAATCCACCCACCAGGAAACTAGAACTGTTGGTTGCACATTACACTCAAAGAGGGGAACACACCATCTTTGGGTGTGATGCCAACTCTCACCATGAAACTTGGGGCAGCAAAGATATCAGCAAAAGGGAAATTCCAGGAGAACCTGGTCGGAGCCCTAATTGGAGGATCTCTCAGATAGGATTGAGTAGATTGATAGGGTTAGATCTTTGgccaaatatAGAAGACATTTCCAGCTGTTTTGACAGCTCATCCACCACTTCTGTTCATGTTACACTGGTAAGAAAAGAAAGCAACAAGCACCACAAGTGCAAAGTATGTGAGAAGAGCTTTATCCAAACATCTCATTTGAAAGAACATCTATTGATTCATGAGGGTGAAAAgccccataaatgtgaaatttgtaagAAGAGCTTTCCCCTCGTATCTAATTTGAGAAaccatcttttgattcataagcACAAGAAGCCCCATAGGTGTGcaatttgtggaaagagctttatccaGTTATCCTATTTcaggacacatcttttgattcatgagggtaagaagccccATAAGTGTGAAGTATGTGGGAAAAACTTTACCCAGGCTTCTACTctgaggaaacatcttttgactcatgagggcaagaagccacattaTTGTGAAgcttgtgggaaaagctttacccaGGTATCTCATTTGAGGGaacattttttgattcatgagggtaggAAGCCACATCAGTGTGAAACCTGcaggaagagctttacccaggcatctaATTTGAAGAagcatcttttgattcatcagggaaagaagccacataagtgtgaagtttgtgggaaaagttttACCCAGGCATCTCATTTGAGagaacatcttttaattcatgatggcaagaagccacataagtgtgaagtttgtgggaagagctttacacaTTCCTCTAATTTCAGGAAGCATGTTTTAATTCATAATGGCAAGCAatcacataagtgtgaagtttgtgggaagagctttgctCACTCTTCAAGTTTGAGTGGACATCTTATTATTCATAAGGTCaacaaatgtgaaattaataatGAGAACTTTACCAACACATCTAATTTGGGAAAACATCTTTTTAGTCAAGAAGACAAGAACCCGTATAAGTGTGAAGTTTGCGggaaaagtttcaccagagcaccTTATTTAAGAGTACATCTTTTAATCCATAATAACAGGAAACCCCATAAGTGTAAAATTTGTAGAAAGAATTTTACCTACTCATTtaatttgaagaaacatcttttggTTCATGAGGGCAGAAAGTCACACAAATGTGAAATTTGCAGGAAGAGCTTTAGTCAGACATCTAATTTGAAGAagcatcttttgattcatcagggcaagaagccacataagtgtgaagtttgtggaaagagctttacccagacatctCATTTGaggcaacatcttttgattcatgaaggcaagaagccacataaatgtgaaatttgtgggaagagctttacccatgcATCTAATTTCAAAAAGCATATTTTGATTCATAATGGCAAGAAATCTCACgaatgtgaattttgtgggaaAACCTTTAATCGGGCATTTAATTTgaaggaacatcttttgattcatgagggcaggaagccacataaatgtgaaatttgcagaaaagactttACCCAGGCATCTCATTTGAAAAATCACCTTTTGATTCATCAGGGCatgaagccacataaatgtgaagtttgtgggaaaagctttagcCGGTTATTCTATTTcaggacacatcttttgattcacaagGGCAAAAAGCCCCATGAGTGTGAGGTATGTGGAAAAAGCTTTACCCAGACATTCAATTTGAaggaacatcttttaattcatgagggcagGAAACCACAtaattgtgaagtttgtgggaagaactttacccaGATATCTcatttgaagaaacatcttttgattcattaG
- Protein Sequence
- MDIKLEIKEEVLDNDQMIPASKGENSCKTAHEDVVGNEIKEEKEVDISLMNEVITAEELHFPYNGPRLKQSSVLAQDLSSSSRNVPSLGGSLCNRNLKDFEPQSAGQQYNNAEELIQPKEKQAMHNTDNKLELYYQNLRTTQESPIVMNESTDHEKINIKLEIKEELLDPNMYSLEMKPEAMEENACIGTHSAVLKNEEWHCNGIQCLPLTEFCSSAITIVKIDCNRKKGLLLSSIFFRGSNPPTRKLELLVAHYTQRGEHTIFGCDANSHHETWGSKDISKREIPGEPGRSPNWRISQIGLSRLIGLDLWPNIEDISSCFDSSSTTSVHVTLVRKESNKHHKCKVCEKSFIQTSHLKEHLLIHEGEKPHKCEICKKSFPLVSNLRNHLLIHKHKKPHRCAICGKSFIQLSYFRTHLLIHEGKKPHKCEVCGKNFTQASTLRKHLLTHEGKKPHYCEACGKSFTQVSHLREHFLIHEGRKPHQCETCRKSFTQASNLKKHLLIHQGKKPHKCEVCGKSFTQASHLREHLLIHDGKKPHKCEVCGKSFTHSSNFRKHVLIHNGKQSHKCEVCGKSFAHSSSLSGHLIIHKVNKCEINNENFTNTSNLGKHLFSQEDKNPYKCEVCGKSFTRAPYLRVHLLIHNNRKPHKCKICRKNFTYSFNLKKHLLVHEGRKSHKCEICRKSFSQTSNLKKHLLIHQGKKPHKCEVCGKSFTQTSHLRQHLLIHEGKKPHKCEICGKSFTHASNFKKHILIHNGKKSHECEFCGKTFNRAFNLKEHLLIHEGRKPHKCEICRKDFTQASHLKNHLLIHQGMKPHKCEVCGKSFSRLFYFRTHLLIHKGKKPHECEVCGKSFTQTFNLKEHLLIHEGRKPHNCEVCGKNFTQISHLKKHLLIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995976;
- 90% Identity
- iTF_00995976;
- 80% Identity
- iTF_00995976;