Mvio000193.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Metallyticus violacea
Gene Symbol
-
Assembly
GCA_030762175.1
Location
CM060830.1:5094848-5136020[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.027 3.3 10.1 1.2 1 23 240 262 240 262 0.96
2 20 6.7e-07 8.1e-05 24.6 2.1 1 23 268 290 268 290 0.98
3 20 1e-05 0.0013 20.9 1.1 1 23 296 318 296 318 0.98
4 20 2e-06 0.00024 23.1 3.2 1 23 324 346 324 346 0.98
5 20 6.1e-06 0.00074 21.6 6.1 1 23 352 374 352 374 0.98
6 20 5.2e-06 0.00063 21.8 3.1 1 23 380 402 380 402 0.98
7 20 0.00029 0.035 16.3 0.1 1 23 408 430 408 430 0.98
8 20 7e-07 8.6e-05 24.6 3.1 1 23 436 458 436 458 0.98
9 20 1.1e-06 0.00013 24.0 1.1 1 23 464 486 464 486 0.98
10 20 2.5e-07 3e-05 26.0 1.7 1 23 492 514 492 514 0.98
11 20 0.00077 0.094 15.0 1.4 1 23 520 542 520 542 0.98
12 20 8.2e-06 0.001 21.2 1.7 1 23 561 583 561 583 0.98
13 20 7.4e-06 0.0009 21.3 2.0 1 23 589 611 589 611 0.97
14 20 2.9e-07 3.6e-05 25.7 0.5 1 23 617 639 617 639 0.98
15 20 2.7e-06 0.00033 22.7 0.5 1 23 645 667 645 667 0.98
16 20 7.2e-08 8.7e-06 27.7 1.9 1 23 673 695 673 695 0.98
17 20 3.3e-05 0.004 19.3 2.4 1 23 701 723 701 723 0.97
18 20 2.1e-08 2.6e-06 29.3 1.4 1 23 729 751 729 751 0.98
19 20 0.003 0.36 13.1 0.0 5 23 767 785 765 785 0.95
20 20 3.2e-08 3.9e-06 28.8 1.3 1 23 791 813 791 813 0.98

Sequence Information

Coding Sequence
atggacCTAAAGTTAGAGATTAATGAAGATCCCCTAGACTGTGGTATGGCTTTGCTGGAGTTGAAACCAGAAACGGAGGAAGAAAGCTCCTCTTGTACTGCTCATGACACTGAAGTAAAATCTTGGGAGGTCATAAATAAATGCACTGATTATGAGAAAGTGGGTATCAAACAAGAGATTAAGGAAGAACTACTGGACCCTGATGAAGATGCAGGTGATTTTATATCCACATATAGTACTGCTCATGATACTTTATTGGAAAATGAGTTACGGTCTGAGAGGATGATAAATGAATGCAGTGACAATGAGAAAATAGATCTCAAATTAGAGTTCAAGACAGAACTGCTGAACCTCAAAAAAGATCCACTTGATCTCAAATTCAAAATTGTAGAAGAGATTGCAAATAATGACGAACAGGATACTTTGTTGAAGAATGAGGTAAAGgAGCAGAAGAAGCCTGAATTGGCTTTAATAAAGGAGGAGATCACAATTGAGGAATCAGACTTTCCGTACAGTGATCCAGGCACTCTTCCTCCTCTGTGGTGTGACAACTGGAGATTGGACCATGGCCTGCTGCAGCAACCTCTATTTCCTCTACCTCtttcttatgacttcattgatacaaGTCAGTATTACAGGTGGGCATGTGATCAGAATACTGGCACCCTACTGGCATCAGTGTTGATAAACCATATTTCGATTCATGAGGATAAGAAACatgaatgtgaagtttgtgagaagagctttatcTGCACATCTGCTTTGAgtgaacatcttttgattcatgcaGGCAAAAAGCCCCATAAGTGCGAAGTTTGTGAAAAGAGTTTTACTCAAGCATCTTATTTGAGGAAACATCTAATGATTCATAATGGCAAAAAACCCcacaagtgtgaagtttgtggaatgAGTTTTATCCACGCATATACTTTGAGggcacatcttttgatacatgagggcaagaggccacataaatgtgaaacttgtggaaagagctttacacaTGCATCTACTTTgagggaacatcttttgattcatgagggcacaaagccccataagtgtgaaacttgtggaaagagctttacccatgCATCTTATTTGAGgcatcatcttttgattcataaggggaaaaagccacataagtgtgaaatttgtggaaagagctttatccaAGCATGTTAtttgaggaaacatcttttgattcatgaggggaAAAAGCCCTATAAGTGTGAAGCTTGTGAGAAGAGTTTTATACTTGCATCTACTTTGAGGGAACATCTTCtgattcatgaaggcaagaaaccgcataagtgtgaagtttgtggaaagagctttactcaTGCATCTTATTTAaggcaacatcttttgattcatgagggcaaaaagctccataaatgtgaagtttgtggaaagagttttatccGAGCATATTATTTGAGGCAGCATGttatgattcatgagggcaaaaaaccccataaatgtgaactttgtggaaagagctttagcCAAGCATCTTATTTGAGGCAACATCTTATGATTCATGCTGGCAAAAAGTCCCATAAGTGTGAATTTTGTGTAAAGAGTTTTACACTAGTATCTTATTTGAGGGcccatcttttgattcatgagaacaaaaagccacataaGGAACATcgtttgattcatgaaggtaagaagccacataagtgtcaACTTTGTGGAAAAAGTATTACCAATTTATCAAAtttgaggaaacatcttttgattcatgagggcaagaagccacataagtgtgatgtttgtgggaagagctttaaccGTGCATTTTACTTGAGGGATCATcgtttgattcatgagggcaaggaGCTATATGagtgtaaagtttgtgggaaaaggTTTATACGAGCATCTTACTTGAGGCAACATCTTCTGATCCATGaaggcaagaagccacataagtgcgaggtttgtggaaagagctttatcgTTGCATCTTATTTGAGGCAACACCTTctaattcatgagggcaagaagccacataagtgtgaagtttgtggaaagagctttacccaagCATCCAATTTGAGGACACACCGtatgattcatgagggcaagaagctacataagtgtgaagtttgtgggaagagcttgaCTCGCGCATCTTACTTGAGGGACCAtcatttgattcatgagggcaaggaacctcataagtgtgaagtttgtggaaagagctttagcCGAGCATCTAATTTGAGGCAACATCTTATGATTCATGAGGGAAGAAATCACAAAAggcaagaagccacacaTAAGAATGatgtttgtggaaagagctttatcaTTGCGTCTTATTTGAGGCAACACCTtctgattcatgagggcaagaagccacataagtgtgaagtttgtggaaagagctttagcCGAGCATCTAATTTGaggcaacatcttttgattcatgagggaagAAATCACATAAGTgggaagtttgtgggaagagctttaacaAGGCATCTTACTTAA
Protein Sequence
MDLKLEINEDPLDCGMALLELKPETEEESSSCTAHDTEVKSWEVINKCTDYEKVGIKQEIKEELLDPDEDAGDFISTYSTAHDTLLENELRSERMINECSDNEKIDLKLEFKTELLNLKKDPLDLKFKIVEEIANNDEQDTLLKNEVKEQKKPELALIKEEITIEESDFPYSDPGTLPPLWCDNWRLDHGLLQQPLFPLPLSYDFIDTSQYYRWACDQNTGTLLASVLINHISIHEDKKHECEVCEKSFICTSALSEHLLIHAGKKPHKCEVCEKSFTQASYLRKHLMIHNGKKPHKCEVCGMSFIHAYTLRAHLLIHEGKRPHKCETCGKSFTHASTLREHLLIHEGTKPHKCETCGKSFTHASYLRHHLLIHKGKKPHKCEICGKSFIQACYLRKHLLIHEGKKPYKCEACEKSFILASTLREHLLIHEGKKPHKCEVCGKSFTHASYLRQHLLIHEGKKLHKCEVCGKSFIRAYYLRQHVMIHEGKKPHKCELCGKSFSQASYLRQHLMIHAGKKSHKCEFCVKSFTLVSYLRAHLLIHENKKPHKEHRLIHEGKKPHKCQLCGKSITNLSNLRKHLLIHEGKKPHKCDVCGKSFNRAFYLRDHRLIHEGKELYECKVCGKRFIRASYLRQHLLIHEGKKPHKCEVCGKSFIVASYLRQHLLIHEGKKPHKCEVCGKSFTQASNLRTHRMIHEGKKLHKCEVCGKSLTRASYLRDHHLIHEGKEPHKCEVCGKSFSRASNLRQHLMIHEGRNHKRQEATHKNDVCGKSFIIASYLRQHLLIHEGKKPHKCEVCGKSFSRASNLRQHLLIHEGRNHISGKFVGRALTRHLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-