Mvio024821.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060837.1:2596536-2598500[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.5e-05 0.0018 20.4 2.3 1 23 12 34 12 34 0.96 2 23 2.7e-05 0.0033 19.5 1.3 1 23 40 62 40 62 0.98 3 23 4.6e-07 5.5e-05 25.1 1.7 1 23 68 90 68 90 0.97 4 23 2.7e-07 3.2e-05 25.9 1.9 1 23 96 118 96 118 0.98 5 23 0.00051 0.063 15.5 1.8 1 23 124 146 124 146 0.98 6 23 0.00013 0.016 17.4 0.2 1 23 152 174 152 174 0.96 7 23 2.6e-06 0.00031 22.8 1.5 1 23 180 202 180 202 0.98 8 23 3.9e-05 0.0048 19.1 2.0 1 23 208 230 208 230 0.98 9 23 0.00019 0.024 16.9 1.3 1 23 236 258 236 258 0.96 10 23 6.8e-05 0.0083 18.3 1.5 1 23 264 286 264 286 0.96 11 23 0.002 0.24 13.7 1.5 1 23 292 314 292 314 0.96 12 23 6.3e-06 0.00077 21.5 0.5 1 23 320 342 320 342 0.96 13 23 0.0011 0.13 14.6 0.8 2 23 349 370 348 370 0.97 14 23 0.00042 0.051 15.8 0.7 1 23 376 398 376 398 0.98 15 23 1.9e-07 2.3e-05 26.4 1.0 1 23 404 426 404 426 0.97 16 23 5.8e-05 0.0071 18.5 2.5 1 23 432 454 432 454 0.96 17 23 3.7e-05 0.0045 19.1 2.1 1 23 460 482 460 482 0.98 18 23 0.00012 0.015 17.5 0.2 1 23 488 510 488 510 0.97 19 23 2.3e-06 0.00028 23.0 1.6 1 23 516 538 516 538 0.96 20 23 6.5e-06 0.00079 21.5 0.7 1 23 544 566 544 566 0.98 21 23 1.4e-07 1.7e-05 26.7 2.1 1 23 572 594 572 594 0.98 22 23 2e-05 0.0024 20.0 0.7 1 23 600 622 600 622 0.97 23 23 0.00013 0.016 17.4 0.7 1 23 628 650 628 650 0.98
Sequence Information
- Coding Sequence
- atgcatcttttgattcatgaaggcaagaaaCAACATAAATGTAAAGTATGTGGGAAAAGTGTAACCAGCATATCTAATTTAAGGAAGCATCTTTTGTTTCATGGtggtaaaaaaccacataaatgtaaagtatgTGGAAAGAACTTTGCTTGGTCATCTAATTTAAGGCAACACCTTTTGATTCATGTGATtaagaaaccacataagtgtgaagattgtgggaagagctttaaccGAATATCTAATTTAAGAGAACATCGCttaattcatgagggtaataCACCGCATAagtgtaaagtttgtgggaagagttttacccGGGATTCTAATTTAAGgatacatcttttgattcatgagggtaacaagccacataagtgtgaagtttgtgggaggAGCTTCTTACGGGTGTATAATATGAAAAAACATCtcttgattcatgagggtaagaagccacataaatgtgaagtttgtgggaagagctttgccTGGCCATCTACTTTAAGAGATCACCTTGTGATTCATGGAGatgagaagccacataaatgtgaagtttgtgggaagagctttgtACGGATATATACCTTGAAGGAACATCTTTTGactcatgaaggtaagaaaccacataaatgtacagtttgtgggaagagctttgtttctgtaacttatatgaaaaaacatcttttaattcatgaggatAAAAatccacataaatgtgaagtttgtgggaagagcttttcCTGGCGAACTACTTTAAGGAACCATCTTGTAATTCATGGGCatgagaagccacataaatgtgaagtttgtggaaaaggCTTTATCCGGGAATTCAATTTAAGGGAGCATTTCTTAAATCATGAGCGTAAAATGCCTCATAactgtgaaatttgtgggaagagctttctAAAGCCATGTGCTTTAAGGGACCATCTTCTGATTCATgggggtaagaagccacatatatgtgaagtttgtggcaaaGGCTTTACCAGGCCATTTACCTTgaaggaacatcttttgattcatgatggTAAGGAAccaaataaatgtaaagtttgtgggaagagcttccTTTCTATATCTTATATGAgaaaacatcttttaattcatgagggtaagaaaccacataaatgtgaactttgtggAAAGGGCTTTCTCAAACCATCTACTCTAAGGGATCATCTgctgattcatgagggtaaaaagcAGCAtatgtgtgaagtttgtggtaagagtTTTACCCAGGCATCTTCcttaagggaacatcttttgacACATGAGGATAAGAAACCGCATAATTGTAAAGTTTGTGGTAAAAGCTTTTATTCTATATCTTATATGAGAAAACATCTTTTAGttcatgagggtaaaaagccacataaatgtgaaatttgtggtaagagctttaccTGGCCATgtaatttaagggaacatctgatgattcatgagggtaagaagccacataagtgtgaggTTTGTGGTAAGGGCTTTATTCGAGCATCTATTTTgaaggaacatcttttgattcatgagcgTAAAGAACCACATAACtgtaaaatttgtggaaagagcttctTTTCTGCATCTAATgtgagaaaacatattttaattcataagggtaagaagccacataaatgtgaagtttgtggaaagagctttacctggCCATATAATCTGAGGGAACATCTCATGATTCATGAAGGTAACAAGCCACATaggtgtgaagtttgtggtaagagctttaccAATTCATCTACCTTAAAGGAACATCTTTTGACTCATGAgaataagaaaccacataaatgtgaaatttgcggAAAGGGTTTCATTTCTGTATCTTATATGAAAAAACATCTTATagttcatgagggtaagaagccacataagtgtgaagtttgtgggaagggTTTCCTCAAGCCTTCTACTTTAAGGAATCATCTGCTGATTCATGAGAGTAAAAAATAG
- Protein Sequence
- MHLLIHEGKKQHKCKVCGKSVTSISNLRKHLLFHGGKKPHKCKVCGKNFAWSSNLRQHLLIHVIKKPHKCEDCGKSFNRISNLREHRLIHEGNTPHKCKVCGKSFTRDSNLRIHLLIHEGNKPHKCEVCGRSFLRVYNMKKHLLIHEGKKPHKCEVCGKSFAWPSTLRDHLVIHGDEKPHKCEVCGKSFVRIYTLKEHLLTHEGKKPHKCTVCGKSFVSVTYMKKHLLIHEDKNPHKCEVCGKSFSWRTTLRNHLVIHGHEKPHKCEVCGKGFIREFNLREHFLNHERKMPHNCEICGKSFLKPCALRDHLLIHGGKKPHICEVCGKGFTRPFTLKEHLLIHDGKEPNKCKVCGKSFLSISYMRKHLLIHEGKKPHKCELCGKGFLKPSTLRDHLLIHEGKKQHMCEVCGKSFTQASSLREHLLTHEDKKPHNCKVCGKSFYSISYMRKHLLVHEGKKPHKCEICGKSFTWPCNLREHLMIHEGKKPHKCEVCGKGFIRASILKEHLLIHERKEPHNCKICGKSFFSASNVRKHILIHKGKKPHKCEVCGKSFTWPYNLREHLMIHEGNKPHRCEVCGKSFTNSSTLKEHLLTHENKKPHKCEICGKGFISVSYMKKHLIVHEGKKPHKCEVCGKGFLKPSTLRNHLLIHESKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -