Mvio002280.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:76564663-76575405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.6e-06 0.00044 22.3 0.2 1 23 54 76 54 76 0.97 2 20 2.4e-06 0.00029 22.9 0.4 2 23 83 104 82 104 0.96 3 20 0.00038 0.046 16.0 2.9 1 23 110 132 110 132 0.97 4 20 1.1e-05 0.0014 20.8 0.7 1 23 138 160 138 160 0.98 5 20 9.8e-07 0.00012 24.1 1.8 1 23 166 188 166 188 0.97 6 20 9.5e-07 0.00012 24.1 2.5 1 23 194 216 194 216 0.98 7 20 5.5e-07 6.7e-05 24.9 0.5 1 23 222 244 222 244 0.97 8 20 2e-06 0.00025 23.1 0.8 1 23 250 272 250 272 0.97 9 20 2e-06 0.00024 23.1 0.7 1 23 278 300 278 300 0.97 10 20 2e-06 0.00024 23.1 0.4 1 23 306 328 306 328 0.96 11 20 1.7e-05 0.0021 20.2 3.4 1 23 334 356 334 356 0.97 12 20 4.4e-06 0.00053 22.1 0.1 2 23 363 384 363 384 0.97 13 20 0.0041 0.5 12.7 2.1 1 23 390 412 390 412 0.95 14 20 6.2e-07 7.6e-05 24.7 0.7 1 23 418 440 418 440 0.98 15 20 1.2e-05 0.0015 20.7 5.6 1 23 446 468 446 468 0.98 16 20 5.3e-06 0.00065 21.8 0.1 1 23 474 496 474 496 0.98 17 20 1.3e-07 1.6e-05 26.8 0.7 1 23 502 524 502 524 0.98 18 20 8.8e-08 1.1e-05 27.4 0.3 1 23 530 552 530 552 0.98 19 20 3.5e-07 4.3e-05 25.5 1.5 1 23 558 580 558 580 0.97 20 20 2e-06 0.00024 23.1 1.9 1 23 586 608 586 608 0.98
Sequence Information
- Coding Sequence
- ATGCACCTCTGGCCTGTAGCCAGCACCCGTGCTTCTGAAGATGGCTGGGTTAATGAGGAGAAAAAGGTTAACATAGCTGCAATGAAGGAGGAGATGACAGTAAAGGAATTAAATTGTCAATTTGACTCTCCAGGggatcATCTTTTGATTCGTGAGCCTCATGAATGTGAAGTCTGTGGGAAAAACTTTACTGCGGCATCTGAACTGAAGAATCATATTCtgattcatgaaggcaagaaTCCATGTCAGTGTGAgatttgtgggaagagttttattGATGCATCTACCTTGAAAGGACATTtattgattcatgagggtaaaaagccACATGAATGTGAAATTTGTAAGAAAAGCTTTAGTGCTGCATGCAAACTGAGaaatcatcttttgattcatgaaggtagaagtccacataaatgtgaaatttgtgcaAAGAGTTTTGTTGATGTATCCACTTtgaggagacatcttttgattcatgggGACAAAAAGCCCCATGAGTGTGAAATTTGCAAGAAAAGTTTTACAACAGCATCAAAATTAAGGAaccatcttttaattcatgaaggcAAATATCCACATAAATGTGCAATTTGTGGAAAATGCTTTACTGAAGCATCTAGTTtgaggagacatcttttgattcatgaggatcAGACTCCCCACacatgtgaagtttgtgggaagagtttcaTTAATCCTTGGAAactgaaaaaacatattttgattcatgatgAGAAGAacccacataagtgtgaagtttgtgacAAGAGCTTTATTAATGCATCTGCTTTGAGCAGACACCTTTTCATTCATAAAGACCAGAGGCCCCATATTTgcgaagtttgtgggaagagctttgtTGATTTGTGGAAGTTAAAAAGACATCTTTTGActcatgagggcaaaaagccccatgaatgtaaagtttgtgggaagagctttattgACCCTTGGAAATTGAGAAGACATCTTGTGATTCACATGGGCAGGAAGCCTCATGAATGTAAAATCTGTGGGAAGAGCTTTGCTCATGCAGACTATTTTAAGTATCATCTTTTAAGTCATGAGAGCAAGAAGACCAATGAATGTGAACTCTGTGGTAAAAGTTTCATTGATCCATGGAAATtgaagagacatcttttgattcacgaaGGCAAGGAGACCCATcattgtgaagtttgtggaaagagctttactgCAGCATTGAGATTGAGGAGCCATCTTTTGAATCATGAAAGGAAGAAGCCATATAgttgtgaaatttgtgggaagtgCTTTACTGAAGCGTTTGCTTTGAGgagacatattttgattcatgagggcaaaaagcccCATAAGTGTAAgttttgtgggaagagctttactcaccCATCTTACTTTAGggatcatcttttgattcatgaaggcagGAGACCATATGAATGTGGAATATGTGGGAAGATCTTTACAGCAGCATCTAAATTAAAGAATCACCTTTTAATTCATGAAGGCAAAAatccacataagtgtgaagtttgtggcaagagTTTTATTGATGCATCTACTTTGAGAAGACATCTATTGATTCATGGGGgcaagaaaccatataaatgtgatgTTTGTGGCAAGAGTTTTATTGATGCATATACTTTGAAAaggcatcttttgattcatgagggcaagaagccacataaatgtaatgtttgtgggaaaagctttattGATGCATCTACTTTGAAAAGGCATCTATTTATTCATGAGGGGAAAAAACCTCATGAATGTAAactttgtgggaagagctttatccagGCATTTCTTTTGAGAAAACACCTTTTGACTCATAATAGCAAGAAAACTTATGAATTTGGAGTATAA
- Protein Sequence
- MHLWPVASTRASEDGWVNEEKKVNIAAMKEEMTVKELNCQFDSPGDHLLIREPHECEVCGKNFTAASELKNHILIHEGKNPCQCEICGKSFIDASTLKGHLLIHEGKKPHECEICKKSFSAACKLRNHLLIHEGRSPHKCEICAKSFVDVSTLRRHLLIHGDKKPHECEICKKSFTTASKLRNHLLIHEGKYPHKCAICGKCFTEASSLRRHLLIHEDQTPHTCEVCGKSFINPWKLKKHILIHDEKNPHKCEVCDKSFINASALSRHLFIHKDQRPHICEVCGKSFVDLWKLKRHLLTHEGKKPHECKVCGKSFIDPWKLRRHLVIHMGRKPHECKICGKSFAHADYFKYHLLSHESKKTNECELCGKSFIDPWKLKRHLLIHEGKETHHCEVCGKSFTAALRLRSHLLNHERKKPYSCEICGKCFTEAFALRRHILIHEGKKPHKCKFCGKSFTHPSYFRDHLLIHEGRRPYECGICGKIFTAASKLKNHLLIHEGKNPHKCEVCGKSFIDASTLRRHLLIHGGKKPYKCDVCGKSFIDAYTLKRHLLIHEGKKPHKCNVCGKSFIDASTLKRHLFIHEGKKPHECKLCGKSFIQAFLLRKHLLTHNSKKTYEFGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -