Mvio000207.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:5384016-5395298[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 3.4e-06 0.00042 22.4 0.5 2 23 36 57 36 57 0.98 2 24 2.3e-07 2.8e-05 26.1 2.3 1 23 63 85 63 85 0.98 3 24 9.2e-06 0.0011 21.0 2.8 1 23 91 113 91 113 0.96 4 24 5.6e-08 6.8e-06 28.0 1.3 1 23 119 141 119 141 0.98 5 24 2.9e-05 0.0036 19.5 4.4 1 23 147 169 147 169 0.98 6 24 6.7e-07 8.2e-05 24.6 0.7 1 23 175 197 175 197 0.98 7 24 5.3e-05 0.0065 18.6 2.6 1 23 203 225 203 225 0.96 8 24 0.42 51 6.4 0.2 8 23 230 245 229 245 0.93 9 24 1.3e-07 1.6e-05 26.8 0.9 1 23 251 273 251 273 0.98 10 24 4e-07 4.9e-05 25.3 2.6 1 23 279 301 279 301 0.97 11 24 3.9e-07 4.8e-05 25.3 0.6 1 23 307 329 307 329 0.97 12 24 3.3e-05 0.004 19.3 5.0 1 23 335 357 335 357 0.97 13 24 4.7e-06 0.00057 21.9 4.3 1 23 363 385 363 385 0.96 14 24 0.00017 0.02 17.1 1.4 1 23 391 413 391 413 0.97 15 24 1.5e-07 1.9e-05 26.6 0.6 1 23 419 441 419 441 0.98 16 24 0.00014 0.017 17.3 3.7 1 23 447 469 447 469 0.97 17 24 0.00096 0.12 14.7 2.2 1 23 475 497 475 497 0.97 18 24 0.00017 0.021 17.0 3.1 1 23 503 525 503 525 0.97 19 24 0.001 0.13 14.6 5.3 1 23 531 553 531 553 0.97 20 24 2.6e-07 3.1e-05 25.9 0.8 1 23 559 581 559 581 0.97 21 24 0.0014 0.17 14.1 1.1 1 23 587 609 587 609 0.97 22 24 1.4e-06 0.00018 23.6 5.0 1 23 615 637 615 637 0.98 23 24 0.00043 0.053 15.8 2.5 3 23 645 665 643 665 0.95 24 24 7.4e-06 0.0009 21.3 2.7 1 23 671 693 671 693 0.97
Sequence Information
- Coding Sequence
- ATGTGTCAGATTTTCCAGATATATTCCGAGTCATCTGGTATATCTTCTGGTTTATCTGGGGGTGAAGGTACAGGTATACCTGTTGATAAGGGCAAAAAGTTCcctaagtgtgaagtttgtggaaacaGTTTTACCCGTGCATCTTAtttgaggaaacatcttttgattcatgaggggaAGAAACctcataagtgtgaagtttgtggaaagagttttacccaGACATCTTATTTGAGAaagcatattttgattcatgaggacaAAAAGCCACATAATTGTGAAGtctgtggaaagagttttacccaTGTATCTTATTTGaggcaacatcttttgattcatgagggcaagaaggcccataagtgtgaagtttgtgggaagagctttacttaTTCATCTAATTTGAgggcacatcttttgattcatgagggaaaGAAATCACATAAGTGTGATATTTGTGGAAAAAGCTTTTATTATGCATGTTAtttgaggaaacatcttttgattcatgatggAAAGAAGTCACAtcagtgtgaagtttgtggaaagagcttttaCTATGCATCTTCTTTGAAAGCacaccttttgattcatgagggcaagcgGCCACAtacatgtgaagtttgtgggaaggaCTTTACCCAGGTATCTCATTTGAAAGAGcattttttgattcatgagggcaagaagcagCGATTTACTCGGGCACCAACCTTGAAAAACCATATTTTGATCCATGAGGGCAAGAAGtcacataagtgtgaaatttgtggaaaaagttTTACACAAGCATCAACTTTGCgagaacatcttttgattcatgagggcaagaagccacataaatgtaaagtatgtggaaagagttttacccaTGCAAGTGCTTTGAGGGCACATCGTTTGATTCATGAAGACAAGAAGCCACATacgtgtgaaatttgtggaaagagctttatccgTGCATCTTACTTGAGggatcatcttttgattcatgagggcaaggacccacataagtgtgaagtttgtgggaagagctttattcGAGCTTGTCACTTGAGGGATCATCGTTTGATTCATGAGAggaagaagccacataagtgtgaagtttgtgggaagagctttaaccGTTCATCGTCCTTGAGGGTGCATCATTttattcatgagggcaagaagccacataaatgtgaagtgtgtgaaAAGagttttatcctagcatcttatTTGAGGCAACATTttatgattcatgagggcaagaagccacataagtgtgaggtttgtggaaagagcttcaTTCAAGCATCTGATTTGAGGCAACATCTTAtgattcatgaaggcaagaagccacataaatgtcaGTTTTGTGGAAAGGGTTTTACCCATGCAAATGGTTTGAGGCAGCATCTTTTGaatcatgagggcaagaaaccacataagtgtgaagtttgtggaaagagctttctCAAAGCATATACTTTAAGGCAACATTTcatgattcatgagggcaagaagccacataaatgtcaGCTATGTGGAAAGGGTTTTACCTATACAAATAGTTTGAAGCAGCATCTATTGaatcatgagggtaagaagccacataaatgtgaaatttgtgaaaagagcTTTCTCCAAGCATCTCATTTGAAGCAACATCATTTGATTCACGAGGGCAAAAAGtcacataagtgtgaaatttgtggaaagagctttatccaAGCATCTTATTTGAAGCAACATCTTataattcatgagggcaagaagccacacaagtgtgaaatttgtggaaagaactttatgaaagcatatattttgaggacacatcttttgattcatgagggcaagatgCCACACAAGTGTCaactttgtggaaagagttttacccaATCACATAATTTGAagcaacatcttttgattcatgagggcaagaagccacatctGTGTGAAGTATGTGGAAAGTGTTTTAGACTTGTATCTAGTTTTAAGGCacaccttttgattcatgaaggtaagaaacccCATAAGTGTGAAGCTTGTGGTAAGAGTTTTACCCATGCTTATACTTTGAGgcaacatattttgattcatgagggcaagaagccacatgtGAAGTTAGTGGAAAGTATTTAA
- Protein Sequence
- MCQIFQIYSESSGISSGLSGGEGTGIPVDKGKKFPKCEVCGNSFTRASYLRKHLLIHEGKKPHKCEVCGKSFTQTSYLRKHILIHEDKKPHNCEVCGKSFTHVSYLRQHLLIHEGKKAHKCEVCGKSFTYSSNLRAHLLIHEGKKSHKCDICGKSFYYACYLRKHLLIHDGKKSHQCEVCGKSFYYASSLKAHLLIHEGKRPHTCEVCGKDFTQVSHLKEHFLIHEGKKQRFTRAPTLKNHILIHEGKKSHKCEICGKSFTQASTLREHLLIHEGKKPHKCKVCGKSFTHASALRAHRLIHEDKKPHTCEICGKSFIRASYLRDHLLIHEGKDPHKCEVCGKSFIRACHLRDHRLIHERKKPHKCEVCGKSFNRSSSLRVHHFIHEGKKPHKCEVCEKSFILASYLRQHFMIHEGKKPHKCEVCGKSFIQASDLRQHLMIHEGKKPHKCQFCGKGFTHANGLRQHLLNHEGKKPHKCEVCGKSFLKAYTLRQHFMIHEGKKPHKCQLCGKGFTYTNSLKQHLLNHEGKKPHKCEICEKSFLQASHLKQHHLIHEGKKSHKCEICGKSFIQASYLKQHLIIHEGKKPHKCEICGKNFMKAYILRTHLLIHEGKMPHKCQLCGKSFTQSHNLKQHLLIHEGKKPHLCEVCGKCFRLVSSFKAHLLIHEGKKPHKCEACGKSFTHAYTLRQHILIHEGKKPHVKLVESI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -