Mvio000593.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Metallyticus violacea
Gene Symbol
-
Assembly
GCA_030762175.1
Location
CM060830.1:16439777-16486261[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 9.7e-06 0.0012 21.0 2.5 1 23 61 83 61 83 0.96
2 26 3e-05 0.0036 19.4 4.5 1 23 89 111 89 111 0.98
3 26 4.3e-05 0.0052 18.9 5.2 1 23 117 139 117 139 0.97
4 26 6e-08 7.3e-06 27.9 2.2 1 23 145 167 145 167 0.97
5 26 1.7e-06 0.0002 23.4 2.4 1 23 173 195 173 195 0.98
6 26 7.6e-05 0.0092 18.2 1.0 1 23 201 223 201 223 0.98
7 26 0.00039 0.047 15.9 2.0 1 23 229 251 229 251 0.98
8 26 1.8e-07 2.2e-05 26.4 1.2 1 23 257 279 257 279 0.98
9 26 1.1e-05 0.0013 20.8 0.5 1 23 285 307 285 307 0.98
10 26 3e-07 3.6e-05 25.7 1.3 1 23 313 335 313 335 0.98
11 26 2.5e-07 3.1e-05 25.9 1.1 1 23 341 363 341 363 0.97
12 26 3e-06 0.00037 22.6 1.9 2 23 370 391 369 391 0.97
13 26 7e-06 0.00086 21.4 2.1 1 23 403 425 403 425 0.98
14 26 0.61 74 5.9 0.1 5 17 435 447 433 448 0.91
15 26 5.6 6.8e+02 2.8 0.7 7 21 478 492 472 493 0.84
16 26 0.0079 0.95 11.8 0.5 2 21 501 520 501 525 0.92
17 26 5e-06 0.00061 21.9 3.5 1 23 561 583 561 583 0.96
18 26 2.7e-06 0.00033 22.7 1.8 1 23 589 611 589 611 0.98
19 26 2e-06 0.00024 23.1 2.4 1 23 617 639 617 639 0.96
20 26 0.00054 0.065 15.5 2.9 1 23 645 667 645 667 0.91
21 26 3.2e-05 0.0039 19.3 2.8 1 23 673 695 673 695 0.97
22 26 2.8e-05 0.0034 19.5 1.2 1 23 701 723 701 723 0.97
23 26 1.9e-05 0.0023 20.0 3.4 1 23 729 751 729 751 0.96
24 26 4.1e-05 0.005 19.0 3.0 1 23 757 779 757 779 0.97
25 26 3.3e-07 4e-05 25.6 1.8 1 23 785 807 785 807 0.98
26 26 2.3e-05 0.0027 19.8 0.3 2 23 814 835 813 835 0.97

Sequence Information

Coding Sequence
ATGCATTCTTTCCTTAATGACTTCAACCATCTTTGTTGGTTGTATGGAGATGGTAGACCACCTGGTGTGTTGTGTGAATCAGTACTGGATCTGATTCGGACAGTTGCAAACTTGCAGAGATGTCACACTTTGGTGTGTCATTCTAGGACACATCAGCTAACTCATGGGGGCAGTAAGCCCCATaattgtgaaatttgtgggaagagttttacccaTATATCATCTTTAAAAACTCATGTTCTTAtacatgagggcaagaagccccataaatgtgaattttgtggtaagagctttaccCATGCATCTTATTTCAGCACTCATATATTGATTCACCAGGGCAAGAAGCCCCATAAATGTGAAGTCTGTGGCAGGAGCTTTACCCATCATTCAACATTGAGAAATCATGCTCTTATCCATAAGGGCAAGAAGCCAcacaagtgtgaagtttgtggaaaaagctTTACCCAGAAATCTTCTTTGAGAAGACATCTTAttattcatgagggcaagaagccccaTAAGTGTGAAATGTGTGGAAAGAGCTATACTTTTGCATCTTCTTTGAGGACACATCTTCGTGTTCATGAAGGCAAGAGgccccataaatgtgaagtttgtgaaagGAGCTTTACCCTGTTATCATCTTTGAAAATACATCTTCTTGtacatgagggcaagaaacctcataagtgtgaagtttgtgagaagaacTTCACTCTTATAACTTCTTTGAAGAGACATCTTCAGGTTCATGAGGGCAAAAAACCatataagtgtgaaatttgtgggaaaagctttgcACATTCATCTACTTTAAAGCAACATGTTTTGATCCATACAGGAAAGAAGCCATATAAGTGTGAAACTTGTGAACGGAGGTTTGCTGATTCGTCGACTCTAAGAAATCATGTTCTGATCCAtaagggcaagaagccacataagtgtgatgtttgtgggaaaagctttatcCAGATATCTTCTTTGAGAAGACATATTCTTACTCATGAAGGCAAAAAGCCCCATAAATGTGgaatttgtggaaagagctttagtCAATCATCTAATCTGAGCACTCATGTTCTGATCCATATGGgcaataagcaaaataaatgtgaaatttgtggaaaaaccTTTACCCGGATAGATACTTTGAGAAGACATCGTTCTAAGCATGAATGCAAGAAGCTATATGACAGCAGGAAGCCTCACAAGTGTGAATTTTGTGGAGAAAGTTTTACTCAATTAACTTCTTTGAGAAGACATCTTCTAATTCATGGAGGCAAGAAGCCACACAAGAGTGAAACTTGTGGAAATAGCTTTACTCAATCATCTAATCTTAATTCACTTATTTCAATCCATATGGACAAGAAGCCAAATAAAGGACATCTTCTAATTCATGAAGACAAGAAGTTTCATAAGTGCAAAAATTTAGGAAAGAGCTGTACCCACTCACCTAATCTGAATATGCATGTTCTTATGATTAAGGGTAAGAAACCAAATGAGTGTAAAACTTGTGAAGAAAACTTTACCATGTCATCTAATGTGAGGAAACACCTTTTAATTCAGAAAGCCCATACATTATATCTGAAGCTACATACAGAAGACATTTCCGGTTATTTGGACAATTCACCCACCTCTTCTATTAAAGTTGCATTGAAATGTAAAGAGGATAACAAAccccataagtgtgaaatttgtagGAAGATCTTTACACGGGCATCTAATTTAAAGAGACATCTCTTTAATCACCAAGGCAAGAAGCCCCACAAGTGTGAAACATGTGAGAAGAGTTTTACTCGGGCATCTTCTTTATGGACACATCAACTTATTCATAGGGGCAAAAAGCCCCATAATTGTGAGGTTTGTGGGAAAAGTTTCACCCATGCATCTTCTTTGAGGACTCATATTCTccttcatgagggcaagaagccccataagtgtgaagtttgtggtaagagctttaccCATGCATCTTCTTTGAGCTTTCATGTTCTGAACCATGAGGGCAGGAAACCCCATAAATGTGAAGTCTGTGGGACAGGCTTTACCCGTCATTCAACTTTAAGGAAACATGCTCTAATCCATGAGGGAAAGAAGCAACAtatgtgtgaagtttgtgggaaaagctttagcCTGTTTTCTTCTTTGAGATCACATCTTCTCATCCACGAGGACGATAAGCCTCATAAATGTCAAacttgtggaaagagctttaccctgTTATCTTCTTTGAGACGACACATTCTTTTTCATGAGGGTAGGAAGCCTCATAAGtgtgaaatatgtggaaaaagCTTTACTCTCGTGTCCTCTTTGAGCAAACATCTTCAtgttcatgagggcaaaaagcctTATaggtgtgaaatttgtggaaggAGCTTTACCCGTCATTCATCTTTAAGGAATCATGTTCTGATTCATGAGGGTCTGAAGccaaataaatgtgaagtgtgtgatAAAGGCTTTACTCAGGTATCTTCTTTGAGAAGACATGCTCTTATTCATGATGGCAAGAAGCCACAtatGTATATCAAGAAAGAAGAAGTTAAGCATGAAAAACCTGAGAACAATGAAGACAATCTACCTGTATCTAACCTTCCAGAGGAGTACATGCTGAACTCAGATGAAGATGAAGACAGAATGGAGGCAACATCAGACCCATATCCTGAAGTGCATGGATTTCACAGAATCCTGATTTTGCACTTGAGTTACAAGccgtACTCAATGACTGGTTGTTTGTGCTTATGCTTCCCAAAAGGAGTTtctccgggagaaagggatgagctGAGGCAGATATTGGGCGGTCAAAATGCAAGACTGGCGAGGAATGGACACAGAAAAGATTGCCAAAAGTTTCCAGATAGAGAACCGCAACGTACGAAGCTCTCCCTCCAGgtgttcgagtccctcagaatgGTCGTTTCCACACCTGGCACCTACCCAAAACGCAAGCCAACGCGCACAAGACCATCTTGCCTAGTACTCTATCCCTga
Protein Sequence
MHSFLNDFNHLCWLYGDGRPPGVLCESVLDLIRTVANLQRCHTLVCHSRTHQLTHGGSKPHNCEICGKSFTHISSLKTHVLIHEGKKPHKCEFCGKSFTHASYFSTHILIHQGKKPHKCEVCGRSFTHHSTLRNHALIHKGKKPHKCEVCGKSFTQKSSLRRHLIIHEGKKPHKCEMCGKSYTFASSLRTHLRVHEGKRPHKCEVCERSFTLLSSLKIHLLVHEGKKPHKCEVCEKNFTLITSLKRHLQVHEGKKPYKCEICGKSFAHSSTLKQHVLIHTGKKPYKCETCERRFADSSTLRNHVLIHKGKKPHKCDVCGKSFIQISSLRRHILTHEGKKPHKCGICGKSFSQSSNLSTHVLIHMGNKQNKCEICGKTFTRIDTLRRHRSKHECKKLYDSRKPHKCEFCGESFTQLTSLRRHLLIHGGKKPHKSETCGNSFTQSSNLNSLISIHMDKKPNKGHLLIHEDKKFHKCKNLGKSCTHSPNLNMHVLMIKGKKPNECKTCEENFTMSSNVRKHLLIQKAHTLYLKLHTEDISGYLDNSPTSSIKVALKCKEDNKPHKCEICRKIFTRASNLKRHLFNHQGKKPHKCETCEKSFTRASSLWTHQLIHRGKKPHNCEVCGKSFTHASSLRTHILLHEGKKPHKCEVCGKSFTHASSLSFHVLNHEGRKPHKCEVCGTGFTRHSTLRKHALIHEGKKQHMCEVCGKSFSLFSSLRSHLLIHEDDKPHKCQTCGKSFTLLSSLRRHILFHEGRKPHKCEICGKSFTLVSSLSKHLHVHEGKKPYRCEICGRSFTRHSSLRNHVLIHEGLKPNKCEVCDKGFTQVSSLRRHALIHDGKKPHMYIKKEEVKHEKPENNEDNLPVSNLPEEYMLNSDEDEDRMEATSDPYPEVHGFHRILILHLSYKPYSMTGCLCLCFPKGVSPGERDELRQILGGQNARLARNGHRKDCQKFPDREPQRTKLSLQVFESLRMVVSTPGTYPKRKPTRTRPSCLVLYP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-