Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0026 4.4 9.2 1.2 6 41 4 40 1 43 0.74

2 8 0.043 74 5.3 0.8 18 38 43 60 34 65 0.82

3 8 0.018 31 6.5 0.3 17 39 70 89 58 95 0.83

4 8 0.16 2.8e+02 3.4 0.4 18 38 99 116 91 120 0.79

5 8 0.0021 3.5 9.5 0.7 6 43 116 154 111 155 0.75

6 8 0.0089 15 7.5 0.5 18 39 155 173 153 183 0.80

7 8 1.4 2.3e+03 0.5 3.3 17 38 182 200 172 205 0.81

8 8 0.00012 0.2 13.5 1.9 6 39 200 229 197 236 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0026	4.4	9.2	1.2	6	41	4	40	1	43	0.74
2	8	0.043	74	5.3	0.8	18	38	43	60	34	65	0.82
3	8	0.018	31	6.5	0.3	17	39	70	89	58	95	0.83
4	8	0.16	2.8e+02	3.4	0.4	18	38	99	116	91	120	0.79
5	8	0.0021	3.5	9.5	0.7	6	43	116	154	111	155	0.75
6	8	0.0089	15	7.5	0.5	18	39	155	173	153	183	0.80
7	8	1.4	2.3e+03	0.5	3.3	17	38	182	200	172	205	0.81
8	8	0.00012	0.2	13.5	1.9	6	39	200	229	197	236	0.83

Coding Sequence: ATGAAgcaacatattttgattcatcagggcaagaaaccacataaatgtgatgtttgtgggaagagctttacccagatcTCTAATCTGAgggtacatcttttgattcatgaaggcagaaagccccataaatgtgaagtttgtgggaaaagatttactCGTGCAACTACTTTAAGGGATCACACTTTGATTCATGAAGTCAAAAAACcgcataagtgtgaagtttgtgggaagagttttacccaGCCATCTAATTTGAggggacatcttttgattcatcagGGCAAGAAGCCATAtgagtgtgaagtttgtggtaagagtTTTAGCAAAGCATCTGCTTTGAGGGACCATGtattgattcatgaaggtaaaaagccacataagtgtgaattTTGTGAGAAAAGCTTCACCCAGGCTTCTAATTTGAGGGGacatattttgattcatcaaGGCAAGAGGCCCCATAAGTGTAAAATTTGTGGGAAAGATTTTACCCAAGCATCCACTTTAAAAGGGCACATTTTGATTCACGAGGGCAAAAAGCctcataagtgtgaagtttgtagGAAAAGCTTTACTCATGCAACTACTTTGAGAAACCATGTTTTCATTCACgaaggtaagaaaccatataaatgtgaagtctgTGGTAAGAGCTTTACTAAGACATCGAATTTGAGAAAACATCTTATGATTCATGAGGGAAAAAGTCTGAATTTTGTAGAAACAAATTTTCCAGAATTTGAAGAACCACCTGTTAATATTTTAGGGCATTAA
Protein Sequence: MKQHILIHQGKKPHKCDVCGKSFTQISNLRVHLLIHEGRKPHKCEVCGKRFTRATTLRDHTLIHEVKKPHKCEVCGKSFTQPSNLRGHLLIHQGKKPYECEVCGKSFSKASALRDHVLIHEGKKPHKCEFCEKSFTQASNLRGHILIHQGKRPHKCKICGKDFTQASTLKGHILIHEGKKPHKCEVCRKSFTHATTLRNHVFIHEGKKPYKCEVCGKSFTKTSNLRKHLMIHEGKSLNFVETNFPEFEEPPVNILGH

Sequence clustering based on sequence similarity using MMseqs2