Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.9e-05 0.085 14.7 1.2 17 41 8 29 2 37 0.84

2 11 0.032 55 5.7 0.5 18 39 37 55 29 64 0.87

3 11 0.0039 6.7 8.6 1.3 3 39 51 83 49 90 0.81

4 11 0.0059 10 8.0 0.2 18 39 93 111 85 116 0.92

5 11 0.47 8e+02 2.0 0.5 18 29 121 132 113 142 0.83

6 11 0.067 1.1e+02 4.7 0.3 18 39 149 167 140 171 0.85

7 11 0.016 27 6.7 0.1 18 39 177 195 168 204 0.86

8 11 0.87 1.5e+03 1.1 2.5 18 39 205 223 200 232 0.83

9 11 0.012 20 7.1 5.5 11 39 227 251 217 261 0.78

10 11 0.002 3.5 9.5 1.1 18 43 261 288 253 289 0.82

11 11 0.0025 4.3 9.2 0.5 18 39 289 307 287 310 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.9e-05	0.085	14.7	1.2	17	41	8	29	2	37	0.84
2	11	0.032	55	5.7	0.5	18	39	37	55	29	64	0.87
3	11	0.0039	6.7	8.6	1.3	3	39	51	83	49	90	0.81
4	11	0.0059	10	8.0	0.2	18	39	93	111	85	116	0.92
5	11	0.47	8e+02	2.0	0.5	18	29	121	132	113	142	0.83
6	11	0.067	1.1e+02	4.7	0.3	18	39	149	167	140	171	0.85
7	11	0.016	27	6.7	0.1	18	39	177	195	168	204	0.86
8	11	0.87	1.5e+03	1.1	2.5	18	39	205	223	200	232	0.83
9	11	0.012	20	7.1	5.5	11	39	227	251	217	261	0.78
10	11	0.002	3.5	9.5	1.1	18	43	261	288	253	289	0.82
11	11	0.0025	4.3	9.2	0.5	18	39	289	307	287	310	0.93

Coding Sequence: ATGCGTGAGAGCcacaaaccacataaatgtgaagtttgtgggaaaaattTCAGTGAGGCATCTAACCTTAGGCGACATCTTTCAACTCATGAAGGAAAGAAATGGCATACATGTGAGATTTGTGGAGAAAGTTTTACCCAGGTATCTAGTTTGAAGCGACATGTTTTAATTCATGAAGGAatgaagccacataaatgtgaagtttgtgggaaaagttttACTCAAGTGTCTAGCTTGAAGCGACATCTCTTGATTCATGAAGAAATGAAACCATATAATTGTGAGGTTTGTGAGAAAAAATTTACCCAGGTATCGAGCTTGAGGcgtcatcttttgattcatgaaggaatgaagccatataaatgtgaagtttgtgggaaaagctttacccaGACATTTCATTTACAGATACATCTTTTggttcatgagggtaagaaaccacataaatgtgaagtttgtggtaaaagTTTTACCCAGGCTTCTACCCTGAAAGGACATCTTAtgattcatgaaaaaattaagcCATAcatatgtgaagtttgtgggaagagctatCCATATGCCTCTCGTTTAAGGACACATTTATTAACACATCAGGGCCAGAAACCAcaaaaatgtgaagtttgtgggaagtgCTTTACCCAGGCATCAACTTTAAAGGGACATCTCTTGATTCATGCCAAAAATAAGCtacataagtgtgaaatttgtagTAAGAGGTTTACACGGTCATCTACCCTAAaggaacatattttgattcatgtcGGAAAAAAACCACATAAGtgtaaagtttgtggaaagagctttacaaGGGCATCTACCTTAAaggaacatattttgattcatgaaggaaagagGCCACATAAGtgtaaagtttgtggaaagagctttacacagacatctactttaagggaacatattttgattcattattGA
Protein Sequence: MRESHKPHKCEVCGKNFSEASNLRRHLSTHEGKKWHTCEICGESFTQVSSLKRHVLIHEGMKPHKCEVCGKSFTQVSSLKRHLLIHEEMKPYNCEVCEKKFTQVSSLRRHLLIHEGMKPYKCEVCGKSFTQTFHLQIHLLVHEGKKPHKCEVCGKSFTQASTLKGHLMIHEKIKPYICEVCGKSYPYASRLRTHLLTHQGQKPQKCEVCGKCFTQASTLKGHLLIHAKNKLHKCEICSKRFTRSSTLKEHILIHVGKKPHKCKVCGKSFTRASTLKEHILIHEGKRPHKCKVCGKSFTQTSTLREHILIHY

Sequence clustering based on sequence similarity using MMseqs2