Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.1e-06 0.0038 18.7 0.0 15 40 7 31 2 35 0.83

2 4 0.00031 1.1 10.8 0.0 3 29 64 89 62 90 0.93

3 4 5.7 1.9e+04 -2.8 0.0 6 13 94 101 94 123 0.66

4 4 6.2e-07 0.0021 19.5 0.0 2 40 137 175 136 179 0.91

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.1e-06	0.0038	18.7	15	40	7	31	2	35	0.83
2	4	0.00031	1.1	10.8	3	29	64	89	62	90	0.93
3	4	5.7	1.9e+04	-2.8	6	13	94	101	94	123	0.66
4	4	6.2e-07	0.0021	19.5	2	40	137	175	136	179	0.91

Coding Sequence: ATGGATCGAGTTCTAGCTGGTGCTTCTGTCTTGAGTGCAGCCAGGGATTACAACATACCTCGTTCTACCCTCCGTGCCTTCATGAAGCGCAGTGGACTTGTGTCATCTATGGACTCATTTGGACAGAGGCATTACAACTTACGACAAAGGAGGCGATTGGGCAGGCCAAGAATACATCCATGGACACTGGAGTCAATTCAGAATGCAATAGAACGAGTGTTGATTGGTGATTCAGTTCGCAAAGTGGCTTCCAGGTTCAACATCCCGCAGCTTAATGCAGCTGAAGCTTTGCAGAACGTGCTGTGTGTTTTGTCACCGGGGGGTGAAGTGGAGACCACTGTTACAAAGGCAGTGACCATAACAGGAACTCCTGTAACAACACCACCAACAACACGAATTCGACGTTCAGAACAAGAACTGCAGAAGGCAGCAGAATGCGTGCAGAAGGGCATGACTTTCCAGAATGTATCAGACATCTTCAAAATACCTATATCGACAATCCGTTTTTACATGGCACGACGTGGCATCCTGCCTCAGCGCCGTAGAGGTCGTGCTGCATTGAATCAAAGTGCAGGTGTACCTTCGCCACACTACCTCACCATGCAGTTCAAGTTGCCTGATATGGGTAACCCACCAAAACTTCCTTCTCCATGA
Protein Sequence: MDRVLAGASVLSAARDYNIPRSTLRAFMKRSGLVSSMDSFGQRHYNLRQRRRLGRPRIHPWTLESIQNAIERVLIGDSVRKVASRFNIPQLNAAEALQNVLCVLSPGGEVETTVTKAVTITGTPVTTPPTTRIRRSEQELQKAAECVQKGMTFQNVSDIFKIPISTIRFYMARRGILPQRRRGRAALNQSAGVPSPHYLTMQFKLPDMGNPPKLPSP

Sequence clustering based on sequence similarity using MMseqs2