Mvio042121.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060843.1:58783646-58792617[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-07 0.0005 21.5 0.0 5 41 44 81 40 83 0.88 2 3 0.0014 4.8 8.8 0.0 23 38 132 147 113 150 0.81 3 3 8.8e-08 0.0003 22.2 0.0 1 39 167 204 167 210 0.86
Sequence Information
- Coding Sequence
- ATGGTGAGGCAGCCCCCCTGTGTAACGCCCACTGTTGTATCTGTCCTTGAAGAGGCCACAGAGTTCCTACCTGTTGCCGCACCACCCCAGCGCCCAGGCTACCACGGCAAGCAGTACTCACCCAAAGTCCTGAGCCAGGCAGTGGAGGATTTCCTCAGAGGCAGGTTCAGCTCGATTCGTGCATGTGCTCGCCATCATGGTGTGCCCATGACCACGCTGCATTACCGGGTTAAGCTTAAGGTTGCGAGCTGGCCCACTGTTGAAGCTTATCATCACACAGTGGCTCATGTTGCAGGGCTGGTGCGGTTCCGGGCACCCCGGCGGTCCTACTCTAGCTCGAGCCTGTGGCAGGCGCTAATGGATGTCAAGATGGGGGAGAGCATCTACAGCTCCGCCAAGTTGCATGGGATTCCCCGCAAGACACTTCGCAACTGGATGCAGcggtggaacatcaagaCGGTGGCATGGCCGCCGAAGGTGCGGCCCTATCGCCAGTACACCAATGACAACCTGTGGGCTGCTCTGATGGATGTCAAGTGTGGCGGCAGCGTCTACCGTGCTTCTAAGGAGCATGGAATCCCTCGCAAAACATTGCGCAACTGGATGAAGCGCTGGAACATCAAGAGCAAGTATGCTGCCCCCACCAGGAAGGTGGAGTATGCAGTGCCACAGACCAATCTAACCCTTTAG
- Protein Sequence
- MVRQPPCVTPTVVSVLEEATEFLPVAAPPQRPGYHGKQYSPKVLSQAVEDFLRGRFSSIRACARHHGVPMTTLHYRVKLKVASWPTVEAYHHTVAHVAGLVRFRAPRRSYSSSSLWQALMDVKMGESIYSSAKLHGIPRKTLRNWMQRWNIKTVAWPPKVRPYRQYTNDNLWAALMDVKCGGSVYRASKEHGIPRKTLRNWMKRWNIKSKYAAPTRKVEYAVPQTNLTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00434732;
- 90% Identity
- -
- 80% Identity
- -